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| Mutant Information |
|---|
| Mutant Name | FN-201 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-201 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31164188 | A-T | HET | INTRON | |
| SBS | Chr1 | 33736563 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 656745 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 1050629 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 25447949 | A-G | HET | INTERGENIC | |
| SBS | Chr12 | 8319561 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 17509075 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 20343492 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 29911190 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 4041504 | T-C | HET | INTRON | |
| SBS | Chr3 | 21497515 | A-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 5626717 | A-G | HET | INTRON | |
| SBS | Chr4 | 1110400 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 14518603 | T-G | HET | INTERGENIC | |
| SBS | Chr4 | 18874465 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 10989301 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 24459171 | G-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 28131027 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 15068174 | T-G | HET | INTERGENIC | |
| SBS | Chr7 | 6562430 | A-G | HET | INTRON | |
| SBS | Chr8 | 18066214 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 22093863 | T-C | HET | INTERGENIC | |
| SBS | Chr9 | 14915859 | C-T | HET | UTR_5_PRIME | |
| SBS | Chr9 | 16568141 | A-C | HOMO | INTERGENIC |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1824001 | 2950000 | 1126000 | 157 |
| Deletion | Chr10 | 2960001 | 3325000 | 365000 | 55 |
| Deletion | Chr8 | 3056769 | 3056790 | 21 | |
| Deletion | Chr7 | 4494042 | 4494046 | 4 | |
| Deletion | Chr8 | 6201240 | 6201243 | 3 | |
| Deletion | Chr1 | 11712701 | 11712706 | 5 | |
| Deletion | Chr2 | 13024885 | 13024894 | 9 | |
| Deletion | Chr6 | 13702513 | 13702515 | 2 | |
| Deletion | Chr9 | 16196387 | 16196388 | 1 | LOC_Os09g26660 |
| Deletion | Chr7 | 22346523 | 22346531 | 8 | LOC_Os07g37310 |
| Deletion | Chr12 | 26590702 | 26590703 | 1 | |
| Deletion | Chr4 | 28594722 | 28594725 | 3 | |
| Deletion | Chr3 | 36253001 | 36413000 | 160000 | 24 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 27699077 | 27699078 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 1290315 | 2255674 | |
| Inversion | Chr7 | 1816550 | 1856137 | LOC_Os07g04220 |
| Inversion | Chr3 | 2253839 | 2255662 | LOC_Os03g04720 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1854127 | Chr1 | 3488121 | LOC_Os07g04220 |
| Translocation | Chr7 | 2241261 | Chr2 | 25024829 | |
| Translocation | Chr12 | 10451555 | Chr7 | 1853498 | LOC_Os07g04220 |
| Translocation | Chr12 | 10456345 | Chr1 | 3488101 | LOC_Os12g18130 |