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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18846146	C-T	HET	INTERGENIC
SBS	Chr1	2054824	C-A	HOMO	INTRON
SBS	Chr1	4812020	C-G	HET	INTERGENIC
SBS	Chr10	1125867	G-T	HET	INTERGENIC
SBS	Chr11	11586236	T-C	HET	INTRON
SBS	Chr11	14936758	G-C	HET	INTERGENIC
SBS	Chr12	15804124	G-A	HET	INTERGENIC
SBS	Chr12	1669130	G-A	HET	INTERGENIC
SBS	Chr12	19058134	A-G	HET	INTRON
SBS	Chr12	23805461	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	25862261	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	1018191	A-G	HET	INTRON
SBS	Chr2	20164573	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr2	4461470	C-T	HOMO	INTRON
SBS	Chr3	10704768	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g19104
SBS	Chr3	2648742	C-T	HOMO	INTERGENIC
SBS	Chr3	2648743	C-T	HOMO	INTERGENIC
SBS	Chr3	32415503	T-C	HOMO	INTERGENIC
SBS	Chr3	3908433	G-A	HET	INTERGENIC
SBS	Chr4	14634163	C-T	HET	INTERGENIC
SBS	Chr4	17468756	G-T	HET	INTERGENIC
SBS	Chr4	23058873	G-T	HET	INTERGENIC
SBS	Chr4	23070062	C-A	HET	INTERGENIC
SBS	Chr4	31377416	C-T	HET	INTERGENIC
SBS	Chr4	31413523	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g52760
SBS	Chr5	17407639	A-T	HOMO	INTERGENIC
SBS	Chr5	20102967	G-T	HOMO	UTR_3_PRIME
SBS	Chr5	24118464	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	5074170	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g09110
SBS	Chr5	5738708	C-T	HET	INTERGENIC
SBS	Chr6	21770702	G-A	HET	INTERGENIC
SBS	Chr6	5496827	C-A	HOMO	INTERGENIC
SBS	Chr7	17963923	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30350
SBS	Chr7	23128665	C-T	HET	INTERGENIC
SBS	Chr7	3281463	G-A	HET	INTERGENIC
SBS	Chr8	10435060	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g17040
SBS	Chr8	4390024	T-C	HET	INTERGENIC
SBS	Chr9	7827552	T-C	HET	INTERGENIC
SBS	Chr9	8696998	T-G	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1472987	1472988	1
Deletion	Chr4	1503323	1503324	1
Deletion	Chr7	5228596	5231977	3381	LOC_Os07g09830
Deletion	Chr6	8910997	8911002	5
Deletion	Chr6	11319399	11319403	4
Deletion	Chr11	11773410	11773416	6
Deletion	Chr1	13217488	13217496	8
Deletion	Chr6	13450582	13450585	3	LOC_Os06g23070
Deletion	Chr9	13831361	13831379	18
Deletion	Chr5	14107603	14107604	1	LOC_Os05g24430
Deletion	Chr3	16023274	16023275	1
Deletion	Chr4	16984531	16984532	1	LOC_Os04g28670
Deletion	Chr11	17369517	17369521	4
Deletion	Chr7	17905528	17905529	1
Deletion	Chr7	19026030	19026032	2
Deletion	Chr4	19779755	19779758	3
Deletion	Chr8	22317912	22317919	7
Deletion	Chr1	23277827	23277839	12
Deletion	Chr7	28897808	28897822	14
Deletion	Chr3	35694799	35694800	1	LOC_Os03g63150
Deletion	Chr3	35809429	35809443	14
Deletion	Chr1	37411025	37411032	7

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	2585702	2585704	3
Insertion	Chr11	2188507	2188507	1
Insertion	Chr11	28824595	28824596	2
Insertion	Chr3	8186693	8186695	3	LOC_Os03g15000
Insertion	Chr6	28570986	28570986	1
Insertion	Chr8	21075346	21075347	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	27579143	28852790	2
Inversion	Chr11	28754912	28852779	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	13612984	Chr1	35351937

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