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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21728923	C-A	HET	INTERGENIC
SBS	Chr1	37765511	T-A	HET	INTRON
SBS	Chr1	42161721	G-A	HET	INTERGENIC
SBS	Chr11	1135167	G-A	HET	INTERGENIC
SBS	Chr12	13479946	G-T	HET	INTERGENIC
SBS	Chr12	19900051	G-A	HOMO	INTERGENIC
SBS	Chr12	19900052	G-A	HOMO	INTERGENIC
SBS	Chr2	15873706	A-G	HOMO	INTRON
SBS	Chr4	13789148	G-A	HET	INTERGENIC
SBS	Chr4	35172247	T-A	HET	INTERGENIC
SBS	Chr5	6519464	T-A	HOMO	INTERGENIC
SBS	Chr5	9985113	G-A	HET	INTRON
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr7	12510790	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g22310
SBS	Chr7	13642393	C-T	HET	INTRON
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr7	7359925	T-G	HET	INTRON
SBS	Chr7	8294795	G-A	HET	INTERGENIC
SBS	Chr8	13613717	A-G	HET	INTRON
SBS	Chr8	18627322	T-A	HET	INTERGENIC
SBS	Chr9	12465333	T-C	HET	INTERGENIC
SBS	Chr9	12561939	C-A	HET	INTERGENIC
SBS	Chr9	20087740	T-C	HET	SYNONYMOUS_CODING
SBS	Chr9	319935	C-T	HET	INTERGENIC
SBS	Chr9	3689325	C-T	HET	INTERGENIC
SBS	Chr9	8835885	T-C	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	412317	412330	13
Deletion	Chr6	841001	851000	10000	3
Deletion	Chr8	870044	870047	3
Deletion	Chr9	1673131	1673136	5
Deletion	Chr4	2470908	2470909	1
Deletion	Chr7	10599001	10890000	291000	47
Deletion	Chr9	12524764	12524765	1
Deletion	Chr7	12720851	12720853	2
Deletion	Chr11	12848967	12849004	37
Deletion	Chr6	13004647	13004653	6
Deletion	Chr6	13815286	13815291	5	LOC_Os06g23670
Deletion	Chr11	15576567	15576568	1
Deletion	Chr9	17289310	17289344	34
Deletion	Chr3	18588710	18588712	2
Deletion	Chr10	18710565	18741239	30674	5
Deletion	Chr5	18797114	18797119	5
Deletion	Chr12	19899619	19899623	4
Deletion	Chr12	19947426	19947427	1
Deletion	Chr1	32703029	32703030	1
Deletion	Chr1	37765304	37765305	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	4536679	4536679	1
Insertion	Chr8	26828128	26828129	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	10552072	10598355	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	12452860	Chr1	37650314	LOC_Os03g21800
Translocation	Chr3	12469048	Chr1	37650310
Translocation	Chr11	15918142	Chr3	8496322
Translocation	Chr10	18710576	Chr7	10311397	LOC_Os10g35070
Translocation	Chr10	18713003	Chr7	11094498	2

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