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Mutant Information

Mutant Name	FN-205 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-205 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21621728	G-T	HOMO	INTERGENIC
SBS	Chr1	21621729	A-T	HOMO	INTERGENIC
SBS	Chr1	37663756	G-A	HOMO	INTERGENIC
SBS	Chr1	453303	A-G	HOMO	INTERGENIC
SBS	Chr11	15179083	A-T	HOMO	INTERGENIC
SBS	Chr11	15305576	A-T	HOMO	INTERGENIC
SBS	Chr12	15068399	G-C	HET	INTERGENIC
SBS	Chr2	21627550	A-C	HET	INTERGENIC
SBS	Chr3	33142235	T-C	HET	INTERGENIC
SBS	Chr3	487107	C-T	HOMO	INTERGENIC
SBS	Chr5	28092760	A-G	HOMO	INTERGENIC
SBS	Chr5	29755922	A-T	HET	INTRON
SBS	Chr6	30436203	G-A	HOMO	INTRON
SBS	Chr7	20783800	G-A	HOMO	INTRON
SBS	Chr9	6313625	C-T	HOMO	INTERGENIC
SBS	Chr9	71836	G-A	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1624831	1624838	7
Deletion	Chr8	5484216	5484256	40
Deletion	Chr2	5683993	5683994	1
Deletion	Chr2	6422257	6422258	1
Deletion	Chr12	11183123	11183128	5
Deletion	Chr5	13287153	13287156	3
Deletion	Chr11	13631614	13631623	9
Deletion	Chr3	15222186	15222187	1
Deletion	Chr11	15550231	15550232	1
Deletion	Chr7	21819162	21819165	3
Deletion	Chr6	22994326	23013196	18870	5
Deletion	Chr1	23014756	23014757	1
Deletion	Chr6	23817787	23817808	21
Deletion	Chr6	25465073	25465085	12	LOC_Os06g42370
Deletion	Chr2	27206014	27206016	2	LOC_Os02g44900
Deletion	Chr4	29878464	29878481	17
Deletion	Chr1	31618456	31618465	9	LOC_Os01g54990
Deletion	Chr4	32844994	32845025	31
Deletion	Chr1	33760323	33760327	4

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	19798786	19798786	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	25054257	29228015
Inversion	Chr1	28019846	28406849	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	5496009	Chr1	25054312	LOC_Os08g09490
Translocation	Chr6	22994390	Chr1	29228015	LOC_Os06g38730
Translocation	Chr6	23013180	Chr1	28407187	LOC_Os06g38764