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Mutant Information |
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Mutant Name | FN-207 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-207 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 44
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 11169599 | G-A | HET | INTRON | |
SBS | Chr1 | 16069983 | T-A | HET | INTERGENIC | |
SBS | Chr1 | 16156299 | A-G | HET | INTERGENIC | |
SBS | Chr1 | 20494869 | A-G | HET | INTRON | |
SBS | Chr1 | 22237288 | G-T | HET | SYNONYMOUS_CODING | |
SBS | Chr1 | 25049994 | C-T | HET | INTERGENIC | |
SBS | Chr1 | 29824040 | G-A | HOMO | INTERGENIC | |
SBS | Chr1 | 30711493 | C-T | HOMO | INTERGENIC | |
SBS | Chr1 | 33252392 | T-C | HOMO | INTRON | |
SBS | Chr2 | 8001789 | T-C | HET | SYNONYMOUS_CODING | |
SBS | Chr2 | 12881435 | C-T | HOMO | INTERGENIC | |
SBS | Chr2 | 13486303 | G-A | HET | INTRON | |
SBS | Chr2 | 14044138 | C-A | HET | INTRON | |
SBS | Chr3 | 532353 | G-C | HOMO | INTERGENIC | |
SBS | Chr3 | 15865877 | A-G | HOMO | INTRON | |
SBS | Chr3 | 15865878 | A-T | HOMO | INTRON | |
SBS | Chr3 | 17467589 | T-G | HOMO | INTERGENIC | |
SBS | Chr3 | 18990389 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g33200 |
SBS | Chr4 | 3448741 | G-A | HOMO | INTERGENIC | |
SBS | Chr4 | 4189864 | A-C | HET | INTERGENIC | |
SBS | Chr4 | 6432062 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 6432063 | T-A | HET | INTERGENIC | |
SBS | Chr4 | 28485687 | T-C | HET | INTRON | |
SBS | Chr4 | 31727622 | T-A | HET | INTERGENIC | |
SBS | Chr5 | 2004108 | C-T | HOMO | INTERGENIC | |
SBS | Chr5 | 6356162 | T-A | HOMO | INTERGENIC | |
SBS | Chr5 | 11894031 | C-A | HET | INTERGENIC | |
SBS | Chr5 | 24678401 | G-A | HET | INTRON | |
SBS | Chr6 | 21577666 | G-A | HOMO | INTERGENIC | |
SBS | Chr7 | 4720422 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 16290362 | C-T | HET | INTRON | |
SBS | Chr7 | 16290363 | T-G | HET | INTRON | |
SBS | Chr7 | 22701684 | G-T | HOMO | INTERGENIC | |
SBS | Chr7 | 29358293 | T-A | HET | INTERGENIC | |
SBS | Chr8 | 19868738 | G-A | HET | INTRON | |
SBS | Chr9 | 1717901 | C-A | HET | INTERGENIC | |
SBS | Chr9 | 5858391 | G-C | HET | INTERGENIC | |
SBS | Chr10 | 11061631 | G-A | HET | INTERGENIC | |
SBS | Chr11 | 10061087 | G-C | HET | INTERGENIC | |
SBS | Chr11 | 21335200 | G-A | HET | INTERGENIC | |
SBS | Chr11 | 23405362 | A-T | HET | SYNONYMOUS_CODING | |
SBS | Chr12 | 7279180 | C-T | HET | INTERGENIC | |
SBS | Chr12 | 12744275 | C-T | HET | INTRON | |
SBS | Chr12 | 26376399 | A-C | HET | INTERGENIC |
Deletions: 12
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr8 | 1291098 | 1291101 | 3 | LOC_Os08g02970 |
Deletion | Chr9 | 7803441 | 7803457 | 16 | |
Deletion | Chr4 | 11021001 | 11899000 | 878000 | 125 |
Deletion | Chr4 | 11911001 | 12261000 | 350000 | 47 |
Deletion | Chr4 | 12265001 | 12423000 | 158000 | 27 |
Deletion | Chr8 | 13629307 | 13629310 | 3 | |
Deletion | Chr5 | 20611432 | 20611435 | 3 | |
Deletion | Chr11 | 21335189 | 21335194 | 5 | |
Deletion | Chr7 | 22702520 | 22702528 | 8 | |
Deletion | Chr11 | 24279767 | 24281502 | 1735 | LOC_Os11g40680 |
Deletion | Chr2 | 25999015 | 25999018 | 3 | LOC_Os02g43150 |
Deletion | Chr1 | 38494132 | 38494137 | 5 | LOC_Os01g66280 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr10 | 3644733 | 3644734 | 2 | |
Insertion | Chr7 | 1525156 | 1525156 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 37961550 | 39343648 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr2 | 18390384 | Chr1 | 22390723 | LOC_Os02g30840 |
Translocation | Chr11 | 24279775 | Chr1 | 27034623 | 2 |
Translocation | Chr11 | 24281481 | Chr1 | 27035769 | |
Translocation | Chr2 | 32046585 | Chr1 | 20797299 | LOC_Os02g52350 |
Tandem duplications: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Tandem Duplication | Chr1 | 20666943 | 22055702 | 1388759 | 199 |