Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31333280	A-T	HOMO	UTR_3_PRIME
SBS	Chr1	4378154	T-C	HET	INTRON
SBS	Chr1	5923059	A-G	HET	INTRON
SBS	Chr10	17097609	G-A	HET	STOP_GAINED	LOC_Os10g32640
SBS	Chr11	10767908	G-A	HOMO	INTERGENIC
SBS	Chr11	18567274	G-A	HET	INTRON
SBS	Chr11	19885636	C-A	HET	INTERGENIC
SBS	Chr12	1379647	G-C	HET	INTERGENIC
SBS	Chr12	4681076	G-A	HET	INTERGENIC
SBS	Chr12	4824455	C-A	HET	INTERGENIC
SBS	Chr2	16144712	A-T	HET	INTERGENIC
SBS	Chr2	25312327	A-G	HET	INTERGENIC
SBS	Chr2	32381787	T-A	HET	INTERGENIC
SBS	Chr3	32725621	T-A	HET	SYNONYMOUS_CODING
SBS	Chr3	35231426	A-T	HET	INTERGENIC
SBS	Chr4	16945193	T-A	HOMO	INTERGENIC
SBS	Chr4	19061310	C-A	HOMO	INTERGENIC
SBS	Chr4	25241616	G-T	HET	INTERGENIC
SBS	Chr5	1718295	G-T	HET	SYNONYMOUS_CODING
SBS	Chr5	25748089	C-T	HET	INTERGENIC
SBS	Chr5	7649831	T-C	HET	INTRON
SBS	Chr6	8007915	G-A	HET	INTERGENIC
SBS	Chr7	3664370	T-C	HOMO	INTERGENIC
SBS	Chr8	3154270	G-A	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	510641	512502	1861	LOC_Os03g01850
Deletion	Chr7	1891164	1891171	7	LOC_Os07g04270
Deletion	Chr9	5179645	5179649	4
Deletion	Chr10	8592501	8592503	2
Deletion	Chr2	11313516	11313549	33
Deletion	Chr12	14091477	14091484	7
Deletion	Chr11	14670776	14670785	9
Deletion	Chr2	16626001	16632000	6000	LOC_Os02g28074
Deletion	Chr2	16657975	16657983	8
Deletion	Chr4	19946424	19946436	12
Deletion	Chr4	20775037	20775042	5
Deletion	Chr4	24662442	24662444	2
Deletion	Chr5	25489280	25489283	3
Deletion	Chr11	25827020	26487657	660637	96
Deletion	Chr5	28720311	28720329	18
Deletion	Chr7	29375887	29375888	1
Deletion	Chr4	30831199	30831200	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	30290909	30290911	3	LOC_Os02g49555
Insertion	Chr4	23799212	23799215	4
Insertion	Chr8	20129313	20129314	2	LOC_Os08g32500

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	10726063	11094083	LOC_Os03g19720
Inversion	Chr2	16017010	16910410	LOC_Os02g28570
Inversion	Chr2	16017022	16631904	LOC_Os02g28074

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1233441	Chr1	34917164
Translocation	Chr12	1371660	Chr2	15395845	LOC_Os12g03480
Translocation	Chr12	2008379	Chr2	15395698
Translocation	Chr10	8628241	Chr8	25106580
Translocation	Chr4	27750011	Chr2	16625635	LOC_Os02g28074

Main menu