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Mutant Information

Mutant Name	FN-21 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-21 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	19067207	G-A	Homo	INTERGENIC
SBS	Chr2	28524195	A-C	Homo	INTRON
SBS	Chr3	14655721	G-A	Homo	INTERGENIC
SBS	Chr4	569718	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g01910
SBS	Chr5	1929293	C-A	Homo	INTERGENIC
SBS	Chr5	2368620	G-A	Homo	INTRON
SBS	Chr5	4053358	G-A	Homo	INTERGENIC
SBS	Chr5	4176717	G-T	Homo	UTR_3_PRIME
SBS	Chr5	4176718	T-A	Homo	UTR_3_PRIME
SBS	Chr5	23859933	T-C	Homo	INTERGENIC
SBS	Chr5	28758113	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	28758118	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g50180
SBS	Chr7	18698321	G-A	Homo	INTERGENIC
SBS	Chr9	2992485	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g06360
SBS	Chr9	19874315	G-A	Homo	INTERGENIC
SBS	Chr12	16070043	G-C	Homo	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2215491	2215492	1
Deletion	Chr8	5738688	5738691	3
Deletion	Chr4	7357076	7357078	2
Deletion	Chr9	10024462	10024473	11
Deletion	Chr8	10914893	10914904	11
Deletion	Chr12	20046459	20052025	5566
Deletion	Chr9	20214455	20214456	1	LOC_Os09g34230
Deletion	Chr8	20535968	20535982	14
Deletion	Chr5	21184056	21184133	77
Deletion	Chr5	21531252	21531267	15
Deletion	Chr1	22392226	22392232	6
Deletion	Chr1	32363429	32363449	20

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	21455305	21455306	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6181919	6183177
Inversion	Chr12	19178189	19893506
Inversion	Chr12	19179984	19893514

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	20046458	Chr1	32017108	LOC_Os01g55580
Translocation	Chr12	20052011	Chr1	32017154	LOC_Os01g55580