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| Mutant Information |
|---|
| Mutant Name | FN-210 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-210 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 43113910 | A-G | HET | INTERGENIC | |
| SBS | Chr10 | 13323163 | T-A | HET | INTERGENIC | |
| SBS | Chr10 | 19475298 | T-C | HET | UTR_5_PRIME | |
| SBS | Chr11 | 16157178 | T-A | HET | INTRON | |
| SBS | Chr11 | 9262361 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 13639119 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 21191448 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 5480418 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 7903251 | A-T | HET | INTRON | |
| SBS | Chr3 | 1180569 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 14126628 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 27481284 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 23438717 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 26446451 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 32591298 | C-A | HOMO | INTRON | |
| SBS | Chr5 | 10770581 | G-A | HET | INTRON | |
| SBS | Chr5 | 1141157 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 15859735 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 17956477 | C-T | HET | INTRON | |
| SBS | Chr6 | 8084454 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 18922622 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 6368225 | C-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 725512 | A-T | HET | INTRON | |
| SBS | Chr8 | 22946403 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 25305251 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 3474006 | A-G | HOMO | INTRON | |
| SBS | Chr8 | 526668 | T-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 3388153 | C-T | HET | INTERGENIC |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 4567568 | 4567573 | 5 | |
| Deletion | Chr7 | 8946766 | 8946774 | 8 | |
| Deletion | Chr2 | 10074660 | 10074661 | 1 | LOC_Os02g17500 |
| Deletion | Chr4 | 12948410 | 12948412 | 2 | LOC_Os04g22850 |
| Deletion | Chr1 | 13313131 | 13313139 | 8 | |
| Deletion | Chr8 | 15311567 | 15311600 | 33 | |
| Deletion | Chr5 | 15579001 | 15937000 | 358000 | 48 |
| Deletion | Chr2 | 19390526 | 19390527 | 1 | |
| Deletion | Chr2 | 19390530 | 19390531 | 1 | |
| Deletion | Chr3 | 19799409 | 19800720 | 1311 | LOC_Os03g35740 |
| Deletion | Chr11 | 20818289 | 20818291 | 2 | |
| Deletion | Chr6 | 23028091 | 23028099 | 8 | |
| Deletion | Chr11 | 24042001 | 24102000 | 60000 | 11 |
| Deletion | Chr3 | 26667212 | 26667222 | 10 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 19504006 | 19504006 | 1 | |
| Insertion | Chr12 | 16895887 | 16895887 | 1 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr3 | 19799404 | Chr2 | 33331636 | LOC_Os03g35740 |
| Translocation | Chr3 | 19800718 | Chr2 | 33331643 | LOC_Os03g35740 |