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| Mutant Information |
|---|
| Mutant Name | FN-211 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-211 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20123872 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 28853944 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 22093407 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 22093408 | T-G | HET | INTERGENIC | |
| SBS | Chr10 | 9645935 | T-G | HOMO | INTRON | |
| SBS | Chr11 | 2097945 | A-T | HOMO | INTRON | |
| SBS | Chr11 | 8480539 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 868030 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g02690 |
| SBS | Chr12 | 16465713 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 16575849 | T-A | HET | INTRON | |
| SBS | Chr12 | 21086540 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 12950323 | A-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 34275126 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 10427201 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 31918520 | T-G | HET | INTERGENIC | |
| SBS | Chr4 | 8815518 | G-A | HET | INTRON | |
| SBS | Chr5 | 12270422 | C-A | HET | INTERGENIC | |
| SBS | Chr8 | 17760321 | T-C | HET | INTERGENIC | |
| SBS | Chr9 | 2188442 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 3643453 | A-G | HOMO | INTERGENIC |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2188343 | 2188344 | 1 | |
| Deletion | Chr3 | 3457675 | 3457676 | 1 | |
| Deletion | Chr8 | 4205815 | 4205820 | 5 | |
| Deletion | Chr12 | 8126552 | 8126564 | 12 | |
| Deletion | Chr6 | 9586280 | 9586281 | 1 | |
| Deletion | Chr4 | 9591570 | 9591594 | 24 | |
| Deletion | Chr9 | 9750254 | 9750255 | 1 | |
| Deletion | Chr3 | 14726068 | 14726070 | 2 | |
| Deletion | Chr8 | 16743478 | 16743479 | 1 | |
| Deletion | Chr4 | 20313634 | 20313647 | 13 | |
| Deletion | Chr11 | 21612750 | 21612755 | 5 | |
| Deletion | Chr3 | 21934853 | 21935292 | 439 | |
| Deletion | Chr8 | 24160699 | 24160700 | 1 | |
| Deletion | Chr2 | 27468264 | 27468291 | 27 | |
| Deletion | Chr3 | 27834649 | 27834661 | 12 | LOC_Os03g48850 |
| Deletion | Chr6 | 28011403 | 28011412 | 9 | LOC_Os06g46240 |
| Deletion | Chr4 | 29941421 | 29941422 | 1 | |
| Deletion | Chr1 | 31832994 | 31832998 | 4 | |
| Deletion | Chr2 | 32417106 | 32417109 | 3 | |
| Deletion | Chr1 | 33277744 | 33277746 | 2 | |
| Deletion | Chr1 | 36218326 | 36244480 | 26154 | 4 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 26038899 | 26038900 | 2 | |
| Insertion | Chr12 | 23630701 | 23630702 | 2 | |
| Insertion | Chr2 | 6051807 | 6051807 | 1 | |
| Insertion | Chr3 | 16732248 | 16732249 | 2 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 4438192 | 34609815 | LOC_Os01g59840 |
| Inversion | Chr1 | 4438216 | 34582715 | LOC_Os01g59790 |
| Inversion | Chr3 | 23297493 | 23318609 | LOC_Os03g41960 |
| Inversion | Chr3 | 23297536 | 23318615 | LOC_Os03g41960 |
| Inversion | Chr2 | 33100944 | 33874264 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 7067939 | Chr1 | 25204295 | LOC_Os01g43980 |