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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11737305	G-A	HOMO	INTERGENIC
SBS	Chr1	12831901	C-T	HOMO	INTERGENIC
SBS	Chr1	23965639	G-C	HOMO	INTERGENIC
SBS	Chr1	8614433	G-T	HET	INTRON
SBS	Chr10	10184889	T-C	HET	INTRON
SBS	Chr10	13397231	C-A	HET	INTRON
SBS	Chr10	15761278	G-A	HET	INTERGENIC
SBS	Chr10	18640127	C-A	HET	INTERGENIC
SBS	Chr10	21241750	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g39744
SBS	Chr11	10499267	A-G	HET	INTERGENIC
SBS	Chr11	8964972	G-A	HET	INTERGENIC
SBS	Chr12	11416966	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	35224437	G-A	HET	INTERGENIC
SBS	Chr2	5861701	C-A	HOMO	INTERGENIC
SBS	Chr2	8784427	C-T	HOMO	INTRON
SBS	Chr4	12933968	A-T	HET	INTERGENIC
SBS	Chr4	27331286	G-A	HET	INTERGENIC
SBS	Chr4	8003627	A-T	HET	INTERGENIC
SBS	Chr6	20193104	A-T	HOMO	INTERGENIC
SBS	Chr6	24802591	T-G	HET	INTERGENIC
SBS	Chr6	24802592	G-T	HET	INTERGENIC
SBS	Chr6	27649734	T-C	HET	INTERGENIC
SBS	Chr7	14883648	C-T	HET	INTERGENIC
SBS	Chr7	14941621	G-A	HOMO	INTERGENIC
SBS	Chr7	5897685	T-A	HET	INTERGENIC
SBS	Chr7	5934798	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g10860
SBS	Chr8	8783	T-C	HOMO	INTERGENIC
SBS	Chr9	15249624	C-T	HOMO	INTERGENIC
SBS	Chr9	17071614	T-C	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	224947	224948	1
Deletion	Chr7	2324615	2324619	4
Deletion	Chr2	3375462	3375463	1
Deletion	Chr4	5914769	5914770	1
Deletion	Chr2	6013975	6013978	3
Deletion	Chr3	7108650	7108659	9	LOC_Os03g13180
Deletion	Chr9	7253347	7253348	1
Deletion	Chr11	7609001	8429000	820000	114
Deletion	Chr11	8436001	8487000	51000	11
Deletion	Chr11	8964961	8964963	2
Deletion	Chr8	9402668	9402671	3
Deletion	Chr6	11944655	11944661	6
Deletion	Chr2	14352500	14352506	6
Deletion	Chr12	14522105	14522114	9
Deletion	Chr11	19558666	19558686	20
Deletion	Chr9	20511899	20511906	7
Deletion	Chr4	25256777	25256791	14	LOC_Os04g42700
Deletion	Chr3	25731055	25731069	14
Deletion	Chr6	30077997	30077999	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	33303789	33303789	1	LOC_Os01g57599
Insertion	Chr3	32575446	32575446	1
Insertion	Chr4	20031884	20031886	3
Insertion	Chr8	179932	179933	2
Insertion	Chr8	24914501	24914501	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	7253137	7608332	LOC_Os11g12800
Inversion	Chr11	10443810	10633962
Inversion	Chr11	25824063	26339503

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	8487360	Chr3	13501743	LOC_Os11g15080

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