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Mutant Information

Mutant Name	FN-213 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-213 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6427332	G-T	HOMO	INTRON
SBS	Chr1	31868002	C-A	HET	INTERGENIC
SBS	Chr2	13116223	C-T	HOMO	INTERGENIC
SBS	Chr2	23479114	G-A	HOMO	INTERGENIC
SBS	Chr2	33390283	A-G	HET	INTRON
SBS	Chr3	27787263	G-T	HOMO	INTERGENIC
SBS	Chr4	207348	C-T	HET	INTERGENIC
SBS	Chr6	12642981	G-A	HOMO	INTERGENIC
SBS	Chr6	15600760	G-A	HET	INTERGENIC
SBS	Chr6	17200694	A-G	HET	INTERGENIC
SBS	Chr6	17871217	C-G	HET	UTR_3_PRIME
SBS	Chr8	6692495	C-A	HET	INTERGENIC
SBS	Chr8	20595071	T-C	HET	SYNONYMOUS_CODING
SBS	Chr8	28286713	A-G	HOMO	INTERGENIC
SBS	Chr9	2158060	C-T	HOMO	INTERGENIC
SBS	Chr9	7802408	C-A	HOMO	INTERGENIC
SBS	Chr10	2024563	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr11	9540996	G-A	HET	INTERGENIC
SBS	Chr11	25421805	C-T	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	3461325	3461329	4
Deletion	Chr10	4690535	4690536	1
Deletion	Chr12	13062913	13062915	2
Deletion	Chr8	13076616	13076619	3
Deletion	Chr5	13819741	13819745	4	LOC_Os05g23990
Deletion	Chr5	13847004	13847016	12
Deletion	Chr11	14764508	14764516	8
Deletion	Chr9	17616001	18478000	862000	131
Deletion	Chr9	18486001	18666000	180000	29
Deletion	Chr2	18514536	18514540	4	LOC_Os02g30990
Deletion	Chr9	18660944	18660945	1
Deletion	Chr1	20697593	20697597	4
Deletion	Chr6	23032479	23032504	25
Deletion	Chr5	25655236	25655255	19	LOC_Os05g44130
Deletion	Chr8	26745777	26745783	6	LOC_Os08g42370
Deletion	Chr3	32588024	32588030	6
Deletion	Chr1	34241001	34251000	10000	4
Deletion	Chr4	35426916	35426926	10

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	20535464	20535464	1	LOC_Os02g34320
Insertion	Chr9	5820652	5820653	2
Insertion	Chr4	23299744	23299746	3
Insertion	Chr9	5009001	5009004	4
Insertion	Chr1	37562801	37562801	1
Insertion	Chr8	19094576	19094576	1
Insertion	Chr9	15201281	15201281	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4110584	4622153	LOC_Os02g07840

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	11747208	Chr7	9125995	LOC_Os10g22620