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Mutant Information

Mutant Name	FN-214 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-214 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21442377	G-A	HOMO	INTERGENIC
SBS	Chr10	1322269	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr10	3522979	T-C	HOMO	INTERGENIC
SBS	Chr11	15869382	C-T	HET	INTERGENIC
SBS	Chr12	110534	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g01190
SBS	Chr3	25352262	C-G	HOMO	INTERGENIC
SBS	Chr3	7559188	T-A	HET	UTR_3_PRIME
SBS	Chr4	16370008	A-G	HET	INTERGENIC
SBS	Chr4	17501809	T-C	HET	INTERGENIC
SBS	Chr4	20528035	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	31253008	G-A	HOMO	INTRON
SBS	Chr5	1658179	G-A	HET	INTERGENIC
SBS	Chr6	26960457	T-A	HET	INTERGENIC
SBS	Chr6	28321050	C-A	HET	INTERGENIC
SBS	Chr9	9138845	C-A	HET	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2025070	2025071	1
Deletion	Chr11	4385679	4385681	2
Deletion	Chr5	13729614	13729621	7
Deletion	Chr3	13980767	13980788	21
Deletion	Chr11	16242319	16242326	7
Deletion	Chr8	17986850	17986866	16
Deletion	Chr1	20104731	20112817	8086	LOC_Os01g36280
Deletion	Chr1	21024857	21024858	1
Deletion	Chr2	27066277	27066287	10
Deletion	Chr5	28947393	28947405	12	LOC_Os05g50480
Deletion	Chr1	32393360	32393361	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	2385612	2385612	1
Insertion	Chr7	14484783	14484783	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3990744	18534784
Inversion	Chr6	20689765	21103988	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17861854	Chr5	3998654	LOC_Os09g29404