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Mutant Information |
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Mutant Name | FN-214 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-214 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 15
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 21442377 | G-A | HOMO | INTERGENIC | |
SBS | Chr3 | 7559188 | T-A | HET | UTR_3_PRIME | |
SBS | Chr3 | 25352262 | C-G | HOMO | INTERGENIC | |
SBS | Chr4 | 16370008 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 17501809 | T-C | HET | INTERGENIC | |
SBS | Chr4 | 20528035 | C-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr4 | 31253008 | G-A | HOMO | INTRON | |
SBS | Chr5 | 1658179 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 26960457 | T-A | HET | INTERGENIC | |
SBS | Chr6 | 28321050 | C-A | HET | INTERGENIC | |
SBS | Chr9 | 9138845 | C-A | HET | INTERGENIC | |
SBS | Chr10 | 1322269 | G-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr10 | 3522979 | T-C | HOMO | INTERGENIC | |
SBS | Chr11 | 15869382 | C-T | HET | INTERGENIC | |
SBS | Chr12 | 110534 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g01190 |
Deletions: 11
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr7 | 2025070 | 2025071 | 1 | |
Deletion | Chr11 | 4385679 | 4385681 | 2 | |
Deletion | Chr5 | 13729614 | 13729621 | 7 | |
Deletion | Chr3 | 13980767 | 13980788 | 21 | |
Deletion | Chr11 | 16242319 | 16242326 | 7 | |
Deletion | Chr8 | 17986850 | 17986866 | 16 | |
Deletion | Chr1 | 20104731 | 20112817 | 8086 | LOC_Os01g36280 |
Deletion | Chr1 | 21024857 | 21024858 | 1 | |
Deletion | Chr2 | 27066277 | 27066287 | 10 | |
Deletion | Chr5 | 28947393 | 28947405 | 12 | LOC_Os05g50480 |
Deletion | Chr1 | 32393360 | 32393361 | 1 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr11 | 2385612 | 2385612 | 1 | |
Insertion | Chr7 | 14484783 | 14484783 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr5 | 3990744 | 18534784 | |
Inversion | Chr6 | 20689765 | 21103988 | 2 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 17861854 | Chr5 | 3998654 | LOC_Os09g29404 |