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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7088346	C-T	HOMO	INTRON
SBS	Chr1	11577317	A-T	HET	INTERGENIC
SBS	Chr1	15320988	G-A	HET	INTRON
SBS	Chr1	19734774	G-C	HET	INTERGENIC
SBS	Chr2	10844067	C-T	HET	INTERGENIC
SBS	Chr2	15538865	C-T	HET	INTERGENIC
SBS	Chr2	24061855	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g39820
SBS	Chr2	30370446	C-T	HOMO	INTERGENIC
SBS	Chr2	30845651	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g50510
SBS	Chr3	4839143	G-T	HOMO	INTERGENIC
SBS	Chr3	6534292	C-A	HOMO	INTERGENIC
SBS	Chr3	8082029	T-A	HET	INTERGENIC
SBS	Chr3	15644860	G-A	HET	INTERGENIC
SBS	Chr3	32914111	C-T	HET	INTRON
SBS	Chr3	34591817	T-A	HOMO	INTERGENIC
SBS	Chr3	34591819	C-A	HOMO	INTERGENIC
SBS	Chr3	34591820	G-A	HOMO	INTERGENIC
SBS	Chr4	3219949	G-C	HET	INTERGENIC
SBS	Chr4	9394683	G-A	HET	INTERGENIC
SBS	Chr4	9394693	T-A	HET	INTERGENIC
SBS	Chr4	13423716	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	1655139	G-A	HET	INTERGENIC
SBS	Chr5	7090673	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g12340
SBS	Chr5	12150055	A-G	HET	INTERGENIC
SBS	Chr5	12778410	G-A	HET	INTRON
SBS	Chr5	20484810	A-G	HET	INTERGENIC
SBS	Chr5	20743922	G-T	HET	INTERGENIC
SBS	Chr6	931777	C-T	HOMO	INTRON
SBS	Chr6	931778	C-T	HOMO	INTRON
SBS	Chr6	5374216	T-A	HET	INTERGENIC
SBS	Chr6	14853821	G-T	HET	INTERGENIC
SBS	Chr7	1317113	G-T	HET	INTERGENIC
SBS	Chr7	8404042	C-T	HET	INTERGENIC
SBS	Chr7	15924348	G-A	HET	INTRON
SBS	Chr8	9747362	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g16000
SBS	Chr8	27856331	A-T	HET	INTERGENIC
SBS	Chr10	16645114	G-A	HET	STOP_GAINED	LOC_Os10g31750
SBS	Chr10	17901552	C-A	HET	INTERGENIC
SBS	Chr11	13125029	T-C	HOMO	INTERGENIC
SBS	Chr12	2006780	G-A	HET	INTERGENIC
SBS	Chr12	17906825	A-G	HOMO	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	799097	799098	1
Deletion	Chr5	1010266	1010267	1
Deletion	Chr3	2863792	2863793	1
Deletion	Chr2	3164015	3164080	65
Deletion	Chr2	3164284	3164287	3
Deletion	Chr6	3379214	3379218	4	LOC_Os06g07090
Deletion	Chr1	4975227	4975228	1
Deletion	Chr6	5547823	5547849	26
Deletion	Chr6	5679424	5985900	306476	52
Deletion	Chr6	6920113	7137259	217146	36
Deletion	Chr4	8853441	8853445	4
Deletion	Chr7	10081001	10134000	53000	6
Deletion	Chr11	10441846	10441863	17
Deletion	Chr4	11865167	11865173	6
Deletion	Chr10	11934578	11934592	14
Deletion	Chr9	13024324	13024325	1
Deletion	Chr11	13179320	13179324	4
Deletion	Chr3	15443671	15443672	1
Deletion	Chr6	15682895	15682896	1
Deletion	Chr4	16103001	16289000	186000	27
Deletion	Chr10	19252909	19252910	1
Deletion	Chr2	19538001	19646000	108000	17
Deletion	Chr11	20557930	20557956	26
Deletion	Chr5	22925658	22925669	11
Deletion	Chr6	23083917	23083920	3	LOC_Os06g38900
Deletion	Chr6	27386772	27386788	16	LOC_Os06g45300
Deletion	Chr4	28705200	28705201	1	LOC_Os04g48200
Deletion	Chr3	28767215	28767220	5	LOC_Os03g50410
Deletion	Chr1	31563829	31563830	1	LOC_Os01g54880
Deletion	Chr4	33589925	33589938	13	LOC_Os04g56350
Deletion	Chr1	36702629	36702637	8

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	8412118	8412119	2
Insertion	Chr11	25763332	25763335	4
Insertion	Chr10	21403400	21403401	2
Insertion	Chr8	10678210	10678211	2
Insertion	Chr1	1063913	1063913	1
Insertion	Chr2	5003472	5003472	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	15747288	16424423	LOC_Os06g28820
Inversion	Chr4	32266256	33090139	LOC_Os04g54160

No Translocation

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