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| Mutant Information |
|---|
| Mutant Name | FN-217 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-217 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1411600 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g03500 |
| SBS | Chr1 | 2665738 | C-A | HOMO | INTRON | |
| SBS | Chr1 | 27468427 | C-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 33614032 | T-A | HET | INTRON | |
| SBS | Chr1 | 8142720 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 9016948 | T-C | HOMO | INTERGENIC | |
| SBS | Chr10 | 2824344 | T-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 18139043 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 20066539 | G-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 3706357 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 7587452 | G-A | HOMO | UTR_5_PRIME | |
| SBS | Chr11 | 9733185 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 2521452 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 8362675 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 28039792 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 3413600 | A-C | HET | INTRON | |
| SBS | Chr2 | 5865255 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr2 | 6868308 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 9259647 | T-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 13002236 | T-G | HET | INTERGENIC | |
| SBS | Chr4 | 32227350 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 5958734 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 2421030 | C-T | HET | INTRON | |
| SBS | Chr6 | 30239465 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 7497802 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 7497804 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 17548277 | G-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 17548278 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 17883294 | A-T | HOMO | INTRON | |
| SBS | Chr7 | 6543809 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 19612255 | C-G | HET | INTERGENIC | |
| SBS | Chr8 | 23872403 | G-C | HET | UTR_3_PRIME | |
| SBS | Chr8 | 28001586 | T-A | HET | INTRON | |
| SBS | Chr9 | 11376173 | A-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 14426329 | C-T | HET | INTRON | |
| SBS | Chr9 | 17708518 | T-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 2981466 | C-T | HET | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 740430 | 740431 | 1 | LOC_Os05g02310 |
| Deletion | Chr9 | 800616 | 800623 | 7 | |
| Deletion | Chr1 | 2166412 | 2166423 | 11 | |
| Deletion | Chr1 | 4850744 | 4850748 | 4 | |
| Deletion | Chr8 | 5243102 | 5243105 | 3 | LOC_Os08g09010 |
| Deletion | Chr7 | 7088117 | 7088118 | 1 | |
| Deletion | Chr1 | 9280985 | 9280998 | 13 | |
| Deletion | Chr12 | 10343512 | 10343513 | 1 | |
| Deletion | Chr12 | 10344947 | 10344973 | 26 | |
| Deletion | Chr11 | 11471692 | 11471694 | 2 | |
| Deletion | Chr6 | 12589071 | 12589080 | 9 | |
| Deletion | Chr9 | 21056488 | 21056498 | 10 | |
| Deletion | Chr7 | 24144354 | 24144355 | 1 | |
| Deletion | Chr1 | 26977231 | 26977232 | 1 | |
| Deletion | Chr3 | 27035508 | 27035510 | 2 | |
| Deletion | Chr7 | 27447481 | 27447491 | 10 | LOC_Os07g45990 |
| Deletion | Chr6 | 28138171 | 28138232 | 61 | |
| Deletion | Chr2 | 30296782 | 30296783 | 1 | |
| Deletion | Chr4 | 30367283 | 30367286 | 3 | LOC_Os04g51250 |
| Deletion | Chr1 | 40711946 | 40711964 | 18 | LOC_Os01g70300 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 3135645 | 3135645 | 1 | |
| Insertion | Chr3 | 22297805 | 22297806 | 2 | |
| Insertion | Chr6 | 21117985 | 21117987 | 3 | LOC_Os06g36090 |
| Insertion | Chr8 | 16212030 | 16212031 | 2 |
No Inversion
No Translocation