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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26393699	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g46380
SBS	Chr10	10007875	C-T	HET	INTERGENIC
SBS	Chr10	11818763	G-A	HOMO	INTERGENIC
SBS	Chr10	1389658	G-C	HET	INTERGENIC
SBS	Chr12	17458539	A-T	HET	INTERGENIC
SBS	Chr12	2142255	C-G	HET	SYNONYMOUS_CODING
SBS	Chr12	21752542	C-G	HOMO	INTERGENIC
SBS	Chr12	21752545	A-G	HOMO	INTERGENIC
SBS	Chr12	21752549	G-A	HOMO	INTERGENIC
SBS	Chr12	8264352	C-T	HET	INTERGENIC
SBS	Chr2	33309922	G-A	HOMO	INTERGENIC
SBS	Chr3	24258986	A-T	HET	INTERGENIC
SBS	Chr3	4111049	C-T	HET	INTERGENIC
SBS	Chr4	25780525	A-G	HOMO	INTERGENIC
SBS	Chr4	28962388	A-G	HET	INTERGENIC
SBS	Chr4	9537826	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	15254842	G-A	HET	INTERGENIC
SBS	Chr5	20526044	G-A	HOMO	INTERGENIC
SBS	Chr5	22647928	G-T	HET	INTERGENIC
SBS	Chr5	29886601	T-A	HOMO	INTRON
SBS	Chr6	10374103	C-T	HET	INTRON
SBS	Chr6	31104333	G-A	HET	INTERGENIC
SBS	Chr6	4474731	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	11410226	G-A	HET	INTERGENIC
SBS	Chr7	20522498	C-A	HET	INTERGENIC
SBS	Chr7	26119246	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g43630
SBS	Chr7	26260395	T-C	HOMO	INTRON
SBS	Chr7	4628688	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	5490354	C-T	HOMO	INTERGENIC
SBS	Chr8	10633666	T-A	HET	UTR_3_PRIME
SBS	Chr8	1343838	C-T	HET	INTERGENIC
SBS	Chr8	19496174	C-A	HET	INTERGENIC
SBS	Chr8	2596687	C-T	HET	INTERGENIC
SBS	Chr8	5818057	C-A	HET	INTERGENIC
SBS	Chr8	9625633	G-C	HET	INTERGENIC
SBS	Chr9	10066417	G-C	HET	INTERGENIC
SBS	Chr9	14674582	G-T	HOMO	INTRON
SBS	Chr9	3562913	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	4091276	C-T	HOMO	INTRON
SBS	Chr9	7260586	T-C	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	447342	447343	1
Deletion	Chr5	2157459	2157461	2
Deletion	Chr3	4109016	4109023	7
Deletion	Chr6	5313181	5313189	8
Deletion	Chr5	5448939	5448949	10
Deletion	Chr8	5897196	5897208	12
Deletion	Chr10	8941089	8941097	8	LOC_Os10g17690
Deletion	Chr6	10396137	10396142	5
Deletion	Chr10	13512231	13512246	15
Deletion	Chr3	15693147	15693159	12
Deletion	Chr7	18475757	18475759	2	LOC_Os07g31200
Deletion	Chr1	20782695	20782697	2
Deletion	Chr4	23021106	23021115	9
Deletion	Chr6	24495861	24495864	3	LOC_Os06g41020
Deletion	Chr1	25524246	25524250	4
Deletion	Chr3	30197150	30197151	1
Deletion	Chr4	34282608	34282609	1	LOC_Os04g57610

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	6728873	6728876	4
Insertion	Chr2	19802174	19802177	4
Insertion	Chr4	26384809	26384809	1
Insertion	Chr4	27023737	27023738	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	3366024	3740960
Inversion	Chr9	3366039	3740962
Inversion	Chr4	17599466	30448185	LOC_Os04g51410

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	4307082	Chr4	30449925	LOC_Os04g51410
Translocation	Chr9	4307088	Chr4	30449187	LOC_Os04g51410

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