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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26771518	G-A	HET	INTERGENIC
SBS	Chr1	6698813	A-T	HET	INTERGENIC
SBS	Chr10	10450938	C-T	HOMO	INTRON
SBS	Chr10	11852717	C-T	HOMO	INTERGENIC
SBS	Chr10	17215166	C-A	HET	INTERGENIC
SBS	Chr10	23174808	G-A	HET	INTRON
SBS	Chr11	24449194	T-A	HOMO	INTERGENIC
SBS	Chr12	13709052	C-T	HET	INTRON
SBS	Chr12	4871756	G-T	HET	INTRON
SBS	Chr2	31546527	C-A	HOMO	INTERGENIC
SBS	Chr2	3402067	G-A	HET	INTERGENIC
SBS	Chr3	20890720	C-T	HET	INTERGENIC
SBS	Chr3	30114951	A-G	HOMO	INTERGENIC
SBS	Chr4	18478875	T-C	HET	INTERGENIC
SBS	Chr4	33722950	G-T	HET	INTRON
SBS	Chr5	11508056	G-A	HET	INTERGENIC
SBS	Chr5	26114819	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44930
SBS	Chr6	28657265	T-G	HOMO	INTERGENIC
SBS	Chr6	28974706	A-G	HOMO	INTERGENIC
SBS	Chr6	7029790	A-G	HOMO	INTERGENIC
SBS	Chr7	23710591	A-T	HET	INTERGENIC
SBS	Chr7	24790751	A-G	HOMO	INTRON
SBS	Chr7	2838010	A-T	HET	INTERGENIC
SBS	Chr7	9862856	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	6436840	T-C	HET	INTERGENIC
SBS	Chr8	8897168	C-G	HOMO	INTERGENIC
SBS	Chr9	14474667	G-T	HET	INTERGENIC

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	300180	300187	7
Deletion	Chr12	1036443	1036446	3
Deletion	Chr5	2000192	2000195	3
Deletion	Chr8	2084146	2084149	3
Deletion	Chr10	17648825	17648826	1	LOC_Os10g33490
Deletion	Chr9	22937676	22937677	1	LOC_Os09g40000
Deletion	Chr1	24272456	24272459	3
Deletion	Chr1	26025001	26055000	30000	6

No Insertion

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	16143040	26054358

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3340914	Chr1	26054377	LOC_Os10g06500
Translocation	Chr10	3340915	Chr1	26054653	LOC_Os10g06500
Translocation	Chr9	12923260	Chr1	16100538

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