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Mutant Information

Mutant Name	FN-22 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-22 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22381175	A-G	Homo	INTRON
SBS	Chr3	10738802	T-C	Homo	INTERGENIC
SBS	Chr3	29780711	C-T	Homo	INTERGENIC
SBS	Chr3	32909811	A-G	Homo	INTERGENIC
SBS	Chr5	13822687	T-A	Homo	INTERGENIC
SBS	Chr5	16152684	C-T	Homo	UTR_3_PRIME
SBS	Chr5	17535487	G-A	Homo	INTERGENIC
SBS	Chr5	28027874	C-A	Homo	INTERGENIC
SBS	Chr6	6784935	G-T	Homo	INTERGENIC
SBS	Chr7	962449	A-T	Homo	INTRON
SBS	Chr9	3200050	C-G	Homo	INTRON
SBS	Chr10	12437040	T-A	Homo	INTRON
SBS	Chr10	12437042	G-A	Homo	INTRON
SBS	Chr10	12437044	C-A	Homo	INTRON

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	377203	377210	7
Deletion	Chr5	2708933	2708936	3	LOC_Os05g05440
Deletion	Chr1	3440585	3440598	13
Deletion	Chr12	3749389	3749390	1	LOC_Os12g07530
Deletion	Chr2	4472130	4472132	2
Deletion	Chr1	5976342	5976343	1
Deletion	Chr12	10011171	10011172	1	LOC_Os12g17480
Deletion	Chr7	12883731	12883732	1
Deletion	Chr12	17170396	17170397	1	LOC_Os12g29020
Deletion	Chr1	17728461	17728463	2
Deletion	Chr6	21686060	21686061	1
Deletion	Chr1	22527908	22527919	11
Deletion	Chr11	22721757	22721758	1
Deletion	Chr6	25744721	25751363	6642	2
Deletion	Chr11	26640715	26640717	2
Deletion	Chr5	27948298	27948303	5

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	20289288	20289290	3
Insertion	Chr6	10369851	10369852	2
Insertion	Chr1	43129334	43129334	1
Insertion	Chr11	5784286	5784286	1
Insertion	Chr8	19998614	19998614	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	11125581	14081352	LOC_Os09g18159
Inversion	Chr6	12268448	25751349

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	22453748	Chr3	10210985	LOC_Os05g38300
Translocation	Chr5	22454003	Chr3	10211030

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr7	15326035	15327924	1889