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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13222706	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	14954797	G-A	HOMO	INTERGENIC
SBS	Chr1	16261932	A-G	HOMO	INTRON
SBS	Chr1	16568656	C-T	HET	INTRON
SBS	Chr1	26082720	A-T	HOMO	INTERGENIC
SBS	Chr1	28510210	T-C	HOMO	INTERGENIC
SBS	Chr1	28611426	G-T	HOMO	INTERGENIC
SBS	Chr1	28611427	C-T	HOMO	INTERGENIC
SBS	Chr1	35990253	T-C	HET	INTERGENIC
SBS	Chr3	9420561	G-A	HET	INTERGENIC
SBS	Chr3	27621966	T-A	HOMO	INTERGENIC
SBS	Chr3	27622061	C-T	HOMO	INTERGENIC
SBS	Chr3	30050196	A-T	HET	INTERGENIC
SBS	Chr3	32943044	G-A	HOMO	INTERGENIC
SBS	Chr4	6684702	C-T	HET	INTRON
SBS	Chr4	10679282	G-A	HET	INTERGENIC
SBS	Chr4	12731786	C-T	HET	INTERGENIC
SBS	Chr4	12926974	A-C	HET	INTERGENIC
SBS	Chr4	17882013	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g29970
SBS	Chr4	18865297	G-A	HET	INTERGENIC
SBS	Chr6	1771530	G-A	HET	INTERGENIC
SBS	Chr6	6442007	A-T	HET	INTRON
SBS	Chr6	17621071	G-A	HET	INTERGENIC
SBS	Chr6	21605303	T-A	HET	INTERGENIC
SBS	Chr6	23337243	G-A	HET	INTERGENIC
SBS	Chr7	3977917	G-T	HET	INTERGENIC
SBS	Chr7	13036449	T-A	HET	INTRON
SBS	Chr8	6796294	G-A	HET	INTRON
SBS	Chr8	13909689	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g23090
SBS	Chr8	13909690	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g23090
SBS	Chr8	18249104	C-T	HOMO	UTR_3_PRIME
SBS	Chr9	866309	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	1208198	G-A	HET	INTERGENIC
SBS	Chr10	21834744	T-C	HET	INTERGENIC
SBS	Chr11	3160972	T-A	HET	INTRON
SBS	Chr11	12998748	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22600
SBS	Chr12	3371955	C-T	HET	INTERGENIC
SBS	Chr12	3689731	A-T	HET	INTERGENIC
SBS	Chr12	5456273	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	13218327	A-C	HET	INTERGENIC
SBS	Chr12	27186702	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g43760

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1210372	1210373	1
Deletion	Chr8	1476158	1476159	1
Deletion	Chr10	3128188	3128192	4
Deletion	Chr11	3593319	3593324	5
Deletion	Chr4	4249401	4249411	10
Deletion	Chr8	4866154	4866156	2
Deletion	Chr6	4935001	4965000	30000	5
Deletion	Chr5	4958399	4958402	3	LOC_Os05g08960
Deletion	Chr6	6042371	6042373	2
Deletion	Chr5	7040429	7040431	2
Deletion	Chr5	7373054	7373056	2
Deletion	Chr10	7812599	7813851	1252	LOC_Os10g14920
Deletion	Chr11	8879379	8879389	10
Deletion	Chr1	10763994	10764000	6
Deletion	Chr9	10791548	10791561	13	LOC_Os09g17630
Deletion	Chr12	12612451	12612452	1
Deletion	Chr11	14309180	14309187	7
Deletion	Chr7	15473246	15473312	66	LOC_Os07g26780
Deletion	Chr9	15903196	15903199	3
Deletion	Chr10	17063944	17063953	9	LOC_Os10g32570
Deletion	Chr3	19283771	19283783	12
Deletion	Chr6	24808144	24808146	2	LOC_Os06g41380
Deletion	Chr6	25527885	25527899	14
Deletion	Chr3	25716243	25716244	1
Deletion	Chr4	27782038	27782039	1
Deletion	Chr7	27888478	27888518	40
Deletion	Chr1	28521296	28521305	9

Insertions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	17844109	17844109	1
Insertion	Chr7	28895204	28895221	18
Insertion	Chr11	4877628	4877644	17
Insertion	Chr8	20204391	20204403	13
Insertion	Chr8	10188635	10188646	12
Insertion	Chr12	25556821	25556828	8
Insertion	Chr2	24228585	24228590	6	LOC_Os02g40010
Insertion	Chr8	14740268	14740273	6
Insertion	Chr1	24524866	24524869	4
Insertion	Chr10	19038169	19038172	4
Insertion	Chr2	24128220	24128223	4
Insertion	Chr4	23881492	23881495	4
Insertion	Chr5	25234605	25234608	4
Insertion	Chr8	26805875	26805878	4
Insertion	Chr1	3105924	3105926	3
Insertion	Chr11	19603304	19603306	3
Insertion	Chr11	4878367	4878368	2
Insertion	Chr11	19881096	19881097	2
Insertion	Chr12	6624869	6624870	2
Insertion	Chr5	526189	526190	2
Insertion	Chr8	9879765	9879766	2
Insertion	Chr8	16701441	16701442	2
Insertion	Chr8	26815767	26815768	2
Insertion	Chr9	5093086	5093087	2
Insertion	Chr12	4106207	4106207	1
Insertion	Chr5	19546902	19546902	1
Insertion	Chr6	27130855	27130855	1

No Inversion

No Translocation

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