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Mutant Information

Mutant Name	FN-223 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-223 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4825528	T-C	HOMO	INTERGENIC
SBS	Chr10	11456677	C-G	HET	INTRON
SBS	Chr10	12604490	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24560
SBS	Chr10	21486934	C-T	HOMO	UTR_3_PRIME
SBS	Chr10	3305615	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr11	12725366	G-A	HET	INTERGENIC
SBS	Chr11	28002736	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g46240
SBS	Chr11	4503285	T-C	HET	INTERGENIC
SBS	Chr2	11632002	A-C	HET	INTERGENIC
SBS	Chr2	25722705	C-T	HET	INTERGENIC
SBS	Chr2	25873727	A-T	HET	INTERGENIC
SBS	Chr2	8241437	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g14830
SBS	Chr2	9227930	G-A	HET	INTERGENIC
SBS	Chr3	12417477	A-T	HET	INTERGENIC
SBS	Chr3	15029788	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g26280
SBS	Chr3	30377951	C-G	HOMO	INTERGENIC
SBS	Chr3	30793571	C-T	HET	INTRON
SBS	Chr3	7326975	A-C	HET	INTRON
SBS	Chr4	29034416	C-T	HET	INTRON
SBS	Chr5	19219343	C-T	HET	INTERGENIC
SBS	Chr5	21971406	C-T	HET	INTERGENIC
SBS	Chr5	5190180	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g09290
SBS	Chr6	17740080	G-C	HET	INTERGENIC
SBS	Chr6	31023554	G-A	HET	INTERGENIC
SBS	Chr6	4773081	G-A	HET	INTERGENIC
SBS	Chr6	994685	T-C	HET	INTERGENIC
SBS	Chr7	119652	C-T	HET	INTERGENIC
SBS	Chr7	17611430	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g29920
SBS	Chr8	21573894	A-C	HET	INTRON
SBS	Chr8	22311258	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g35390
SBS	Chr8	8303236	C-A	HOMO	INTRON
SBS	Chr9	18781316	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g31220
SBS	Chr9	18781317	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g31220
SBS	Chr9	19660402	A-G	HET	INTERGENIC
SBS	Chr9	19856807	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g33620
SBS	Chr9	19856808	A-T	HET	SYNONYMOUS_CODING
SBS	Chr9	19856814	A-T	HET	STOP_GAINED	LOC_Os09g33620
SBS	Chr9	21617295	G-C	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	942113	947182	5069	LOC_Os06g02650
Deletion	Chr5	2017677	2017679	2
Deletion	Chr4	2514403	2514404	1	LOC_Os04g05080
Deletion	Chr4	2835636	2835637	1
Deletion	Chr8	2904402	2904406	4
Deletion	Chr12	4538343	4538344	1
Deletion	Chr5	6246001	6358000	112000	14
Deletion	Chr2	11147109	11147110	1
Deletion	Chr11	13040987	13040991	4	LOC_Os11g22670
Deletion	Chr9	13809814	13809815	1
Deletion	Chr6	13839340	13839341	1
Deletion	Chr6	16940951	16940955	4
Deletion	Chr6	17746817	17746835	18
Deletion	Chr5	17831417	17831418	1
Deletion	Chr9	18496186	18496189	3	LOC_Os09g30390
Deletion	Chr10	19611468	19611469	1
Deletion	Chr6	19959614	19959616	2	2
Deletion	Chr9	20871389	20871392	3
Deletion	Chr7	20887001	21311000	424000	72
Deletion	Chr2	23843011	23843013	2
Deletion	Chr7	24406077	24406082	5
Deletion	Chr2	25533710	25533719	9
Deletion	Chr2	25748713	25748725	12
Deletion	Chr2	25927370	25927373	3
Deletion	Chr12	26267631	26267633	2
Deletion	Chr7	28257919	28257934	15
Deletion	Chr6	29586295	29586297	2
Deletion	Chr3	31073836	31073838	2
Deletion	Chr1	31826898	31826899	1	LOC_Os01g55290

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	3318561	3318564	4
Insertion	Chr1	9391364	9391375	12
Insertion	Chr10	2238013	2238014	2
Insertion	Chr10	2674547	2674548	2
Insertion	Chr12	21282427	21282428	2
Insertion	Chr12	27134457	27134460	4
Insertion	Chr12	9328593	9328594	2
Insertion	Chr2	18453732	18453739	8
Insertion	Chr2	19219927	19219930	4
Insertion	Chr2	24146279	24146282	4
Insertion	Chr3	11684668	11684671	4
Insertion	Chr3	7620255	7620256	2
Insertion	Chr4	20046112	20046112	1	LOC_Os04g33110
Insertion	Chr7	3643477	3643479	3
Insertion	Chr8	13595894	13595894	1
Insertion	Chr8	16843436	16843437	2
Insertion	Chr8	18371379	18371380	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4630060	6245587
Inversion	Chr5	4630077	6375602
Inversion	Chr5	5700068	5736018
Inversion	Chr5	5700087	5736035
Inversion	Chr2	6901411	8136603	LOC_Os02g14730
Inversion	Chr2	6901431	8136611	LOC_Os02g14730
Inversion	Chr11	21367256	21402891	LOC_Os11g36280
Inversion	Chr11	21370720	21405713	LOC_Os11g36330

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	946178	Chr2	2070469	LOC_Os06g02650
Translocation	Chr6	947179	Chr2	2070472
Translocation	Chr11	21367291	Chr4	5013927	LOC_Os11g36280
Translocation	Chr11	21370711	Chr4	5013931
Translocation	Chr7	29233976	Chr6	942126	LOC_Os06g02650
Translocation	Chr7	29234002	Chr6	946114	LOC_Os06g02650

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