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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	611148	T-A	HET	INTERGENIC
SBS	Chr1	19687663	G-A	HET	INTERGENIC
SBS	Chr1	37992810	T-A	HET	INTERGENIC
SBS	Chr2	18447514	C-T	HET	INTRON
SBS	Chr3	12323952	C-T	HET	INTERGENIC
SBS	Chr3	15334275	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g26870
SBS	Chr3	28725446	C-A	HOMO	INTERGENIC
SBS	Chr5	5774900	T-C	HET	INTERGENIC
SBS	Chr5	12818200	C-T	HET	INTERGENIC
SBS	Chr5	26971180	T-A	HOMO	INTERGENIC
SBS	Chr6	6181979	C-G	HET	INTERGENIC
SBS	Chr6	14404371	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g24570
SBS	Chr7	4761748	G-A	HET	INTERGENIC
SBS	Chr7	8778585	T-A	HET	INTERGENIC
SBS	Chr7	19414242	G-C	HET	INTERGENIC
SBS	Chr7	24088619	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g40150
SBS	Chr7	26967696	C-T	HET	INTERGENIC
SBS	Chr7	26967703	A-T	HET	INTERGENIC
SBS	Chr7	26967711	T-G	HET	INTERGENIC
SBS	Chr8	4626045	T-A	HET	INTERGENIC
SBS	Chr8	6031419	C-G	HOMO	INTERGENIC
SBS	Chr8	7159199	G-A	HET	INTERGENIC
SBS	Chr8	24225596	A-T	HET	INTRON
SBS	Chr9	1170619	T-A	HET	INTERGENIC
SBS	Chr10	14356938	G-A	HOMO	INTERGENIC
SBS	Chr10	14356939	T-A	HOMO	INTERGENIC
SBS	Chr10	15484146	C-T	HET	INTERGENIC
SBS	Chr11	24733614	C-T	HET	INTERGENIC
SBS	Chr12	10876008	C-A	HET	INTRON
SBS	Chr12	10876009	C-A	HET	INTRON
SBS	Chr12	14422434	G-C	HET	INTERGENIC
SBS	Chr12	16443819	C-A	HET	INTRON

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1892276	1892286	10
Deletion	Chr4	2154360	2154361	1
Deletion	Chr1	2934212	2934230	18
Deletion	Chr6	3566977	3566985	8	LOC_Os06g07420
Deletion	Chr7	4570535	4570536	1
Deletion	Chr9	5708358	5708359	1
Deletion	Chr5	6553700	6553716	16
Deletion	Chr6	6668951	6668964	13
Deletion	Chr3	6691361	6691369	8	LOC_Os03g12600
Deletion	Chr6	6697842	6697864	22	LOC_Os06g12360
Deletion	Chr9	8519730	8519731	1
Deletion	Chr1	10132704	10132709	5
Deletion	Chr4	11685824	11685830	6
Deletion	Chr2	13812899	13812904	5
Deletion	Chr1	14194847	14194895	48
Deletion	Chr6	14402533	14402554	21
Deletion	Chr12	16308623	16308624	1	LOC_Os12g27680
Deletion	Chr2	18069617	18069665	48	LOC_Os02g30330
Deletion	Chr6	19625617	19625625	8
Deletion	Chr12	19684341	19684347	6
Deletion	Chr8	19995139	19995140	1
Deletion	Chr8	19995140	19995141	1
Deletion	Chr4	21037564	21037567	3
Deletion	Chr3	21181083	21181093	10
Deletion	Chr12	21492094	21492095	1	LOC_Os12g35350
Deletion	Chr10	22734636	22734637	1
Deletion	Chr1	25167402	25167404	2
Deletion	Chr1	26410219	26410238	19
Deletion	Chr6	27327716	27327717	1
Deletion	Chr2	29034011	29034013	2	LOC_Os02g47520
Deletion	Chr4	35501523	35501525	2
Deletion	Chr1	38223653	38223665	12

Insertions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	17244955	17244966	12	LOC_Os07g29360
Insertion	Chr1	4967446	4967451	6
Insertion	Chr11	186598	186601	4
Insertion	Chr11	6299450	6299453	4
Insertion	Chr11	28819193	28819196	4
Insertion	Chr2	7935427	7935430	4
Insertion	Chr4	347730	347733	4
Insertion	Chr6	24037839	24037842	4
Insertion	Chr9	4743399	4743402	4
Insertion	Chr9	7956104	7956107	4
Insertion	Chr2	24578447	24578449	3
Insertion	Chr2	26971183	26971185	3
Insertion	Chr3	25745703	25745705	3
Insertion	Chr4	16721856	16721858	3
Insertion	Chr1	4915293	4915294	2
Insertion	Chr1	39804019	39804020	2
Insertion	Chr12	23490639	23490640	2
Insertion	Chr4	31505595	31505596	2
Insertion	Chr6	4421592	4421593	2
Insertion	Chr7	3344875	3344876	2	LOC_Os07g06850
Insertion	Chr4	23776747	23776747	1
Insertion	Chr4	31802144	31802144	1	LOC_Os04g53390
Insertion	Chr7	7769133	7769133	1

No Inversion

No Translocation

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