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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	414504	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g01780
SBS	Chr1	12873152	T-C	HOMO	INTRON
SBS	Chr1	17624485	C-T	HOMO	INTRON
SBS	Chr1	33907504	T-A	HET	INTRON
SBS	Chr2	8918116	A-G	HOMO	INTRON
SBS	Chr2	13483992	T-C	HET	INTERGENIC
SBS	Chr2	21567468	T-G	HOMO	INTERGENIC
SBS	Chr2	24665400	T-C	HOMO	INTERGENIC
SBS	Chr4	6589242	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12000
SBS	Chr4	21456106	G-A	HET	INTERGENIC
SBS	Chr4	21456107	C-G	HET	INTERGENIC
SBS	Chr5	7338119	C-T	HOMO	INTERGENIC
SBS	Chr5	24819295	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g42380
SBS	Chr6	15414759	A-C	HET	INTERGENIC
SBS	Chr6	20801787	G-A	HET	INTERGENIC
SBS	Chr6	26955599	G-A	HOMO	INTERGENIC
SBS	Chr6	29367041	T-A	HET	INTRON
SBS	Chr7	10414448	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17630
SBS	Chr7	19908262	A-G	HET	INTRON
SBS	Chr8	15344963	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g25260
SBS	Chr8	20414675	A-G	HET	INTRON
SBS	Chr8	28223098	G-A	HOMO	INTERGENIC
SBS	Chr10	3244342	C-T	HET	INTERGENIC
SBS	Chr10	4314538	G-T	HET	INTERGENIC
SBS	Chr10	13729649	C-T	HET	INTERGENIC
SBS	Chr10	21701078	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g40540
SBS	Chr11	3447166	C-G	HET	INTERGENIC
SBS	Chr11	7651086	C-T	HET	UTR_3_PRIME
SBS	Chr11	10264519	T-A	HET	INTRON
SBS	Chr11	18117372	C-A	HOMO	INTERGENIC
SBS	Chr12	2751696	G-T	HET	INTERGENIC
SBS	Chr12	8849540	T-G	HET	INTRON
SBS	Chr12	11855098	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	13481281	T-A	HET	INTERGENIC
SBS	Chr12	19310308	C-G	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	56582	56591	9
Deletion	Chr11	302902	1447189	1144287	215
Deletion	Chr3	518234	518246	12
Deletion	Chr8	1833989	1834000	11	LOC_Os08g03840
Deletion	Chr2	2605811	2605814	3
Deletion	Chr11	3446603	3475114	28511	4
Deletion	Chr6	3708873	3709464	591
Deletion	Chr5	5766899	5766901	2	LOC_Os05g10590
Deletion	Chr11	6041479	6041486	7
Deletion	Chr7	6128421	6128424	3	LOC_Os07g11090
Deletion	Chr12	10782490	10782498	8
Deletion	Chr6	13338422	13338429	7
Deletion	Chr12	14447790	14447802	12
Deletion	Chr9	14638361	14638362	1
Deletion	Chr8	16285540	16285587	47
Deletion	Chr10	16606464	16606465	1
Deletion	Chr10	17362185	17362186	1
Deletion	Chr3	18228709	18228719	10
Deletion	Chr3	20029411	20029414	3
Deletion	Chr4	20075152	20075161	9
Deletion	Chr12	21473596	21473644	48
Deletion	Chr10	22730977	22730991	14
Deletion	Chr4	25269938	25269940	2
Deletion	Chr3	29847767	29847768	1
Deletion	Chr4	30882354	30882355	1

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	31443242	31443256	15	LOC_Os04g52810
Insertion	Chr4	16969315	16969325	11
Insertion	Chr8	20060639	20060644	6
Insertion	Chr10	3592469	3592472	4
Insertion	Chr12	18907607	18907610	4
Insertion	Chr4	4260793	4260796	4
Insertion	Chr6	23476781	23476784	4
Insertion	Chr3	15387908	15387909	2
Insertion	Chr3	20958217	20958218	2
Insertion	Chr5	6265174	6265175	2
Insertion	Chr10	15330753	15330753	1	LOC_Os10g29514
Insertion	Chr3	13181843	13181843	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	26673650	27028252	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	2970906	Chr3	34846518	LOC_Os03g61400
Translocation	Chr11	3446679	Chr6	12359539
Translocation	Chr11	3475106	Chr6	12359536	LOC_Os11g06990

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