Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-227 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-227 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 32718221 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 41143977 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 9603230 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g16840 |
| SBS | Chr11 | 10404950 | T-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr11 | 15499908 | A-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 28536443 | G-A | HET | INTRON | |
| SBS | Chr12 | 9994886 | A-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 14407467 | A-G | HOMO | INTRON | |
| SBS | Chr2 | 22881630 | G-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 33815671 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 4341857 | A-C | HET | INTRON | |
| SBS | Chr4 | 25205047 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 24787293 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 15669323 | G-A | HET | INTRON | |
| SBS | Chr6 | 27263314 | A-G | HOMO | INTRON | |
| SBS | Chr7 | 16620370 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 11782010 | T-A | HET | UTR_3_PRIME | |
| SBS | Chr8 | 14214839 | A-C | HET | INTRON | |
| SBS | Chr8 | 15262112 | T-C | HET | INTRON | |
| SBS | Chr8 | 15608449 | C-T | HET | INTRON | |
| SBS | Chr8 | 1703350 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 22701182 | G-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 5372728 | T-G | HET | INTERGENIC | |
| SBS | Chr8 | 5616538 | G-T | HET | INTERGENIC |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 914978 | 914991 | 13 | |
| Deletion | Chr2 | 4896051 | 4896052 | 1 | |
| Deletion | Chr1 | 4977588 | 4977589 | 1 | |
| Deletion | Chr1 | 4977592 | 4977593 | 1 | |
| Deletion | Chr5 | 8986668 | 8986671 | 3 | |
| Deletion | Chr8 | 9238976 | 9238993 | 17 | |
| Deletion | Chr10 | 10245142 | 10245144 | 2 | |
| Deletion | Chr5 | 10522345 | 10522350 | 5 | |
| Deletion | Chr2 | 10995867 | 10995872 | 5 | LOC_Os02g18840 |
| Deletion | Chr8 | 11140527 | 11140544 | 17 | |
| Deletion | Chr6 | 14603529 | 14603560 | 31 | |
| Deletion | Chr11 | 15117655 | 15117724 | 69 | |
| Deletion | Chr11 | 17832001 | 17977000 | 145000 | 21 |
| Deletion | Chr11 | 22395054 | 22395060 | 6 | |
| Deletion | Chr5 | 24178053 | 24178061 | 8 | LOC_Os05g41270 |
| Deletion | Chr7 | 27999217 | 27999218 | 1 | |
| Deletion | Chr2 | 30357473 | 30357488 | 15 | |
| Deletion | Chr2 | 31299593 | 31299606 | 13 | LOC_Os02g51150 |
| Deletion | Chr2 | 32957975 | 32957983 | 8 | |
| Deletion | Chr3 | 34273070 | 34273089 | 19 | |
| Deletion | Chr3 | 34628413 | 34628414 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 7813592 | 7813593 | 2 | |
| Insertion | Chr2 | 24964446 | 24964446 | 1 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 17831846 | Chr1 | 32365399 | |
| Translocation | Chr11 | 17832901 | Chr1 | 32365359 |