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Mutant Information

Mutant Name	FN-23 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-23 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8379618	A-G	Homo	INTERGENIC
SBS	Chr1	31059517	C-A	Homo	INTERGENIC
SBS	Chr2	6796794	G-A	Homo	INTERGENIC
SBS	Chr3	20113392	T-C	Homo	INTERGENIC
SBS	Chr3	20113393	C-A	Homo	INTERGENIC
SBS	Chr3	31959397	C-T	Homo	INTERGENIC
SBS	Chr5	2545199	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	2545200	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g05220
SBS	Chr5	16615669	A-T	Homo	INTERGENIC
SBS	Chr5	17165860	G-C	Homo	INTERGENIC
SBS	Chr5	17434547	A-T	Homo	INTERGENIC
SBS	Chr7	9197336	A-T	Homo	INTERGENIC
SBS	Chr7	18960558	A-T	Homo	INTRON
SBS	Chr7	25991341	C-T	Homo	INTRON
SBS	Chr10	5949170	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g10760
SBS	Chr10	15939926	C-T	Homo	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1416001	1487000	71000	15
Deletion	Chr10	2820916	2820917	1
Deletion	Chr1	4451628	4451698	70
Deletion	Chr9	5317735	5317744	9	LOC_Os09g09810
Deletion	Chr6	5380507	5380508	1
Deletion	Chr1	5784429	5784448	19
Deletion	Chr1	5926210	5926236	26
Deletion	Chr5	5953060	5953169	109
Deletion	Chr2	6543734	6543736	2
Deletion	Chr3	9638632	9638649	17
Deletion	Chr1	11702199	11702200	1
Deletion	Chr12	15536001	15552000	16000	2
Deletion	Chr12	15620001	15681000	61000	10
Deletion	Chr3	15670325	15670329	4
Deletion	Chr7	18858969	18858970	1
Deletion	Chr5	21622546	21622571	25
Deletion	Chr5	22032899	22032906	7
Deletion	Chr5	22907436	22907437	1
Deletion	Chr3	25113840	25113844	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	11333763	11333763	1	LOC_Os10g21950
Insertion	Chr12	3959845	3959846	2
Insertion	Chr11	14094500	14094500	1
Insertion	Chr4	9389048	9389048	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	15484040	15566960
Inversion	Chr1	29914402	29992205	LOC_Os01g52130

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1416421	Chr9	7294801	LOC_Os09g12730
Translocation	Chr9	16680084	Chr2	10459213	LOC_Os02g18030