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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN-231 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-231 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36046113	C-T	HOMO	INTERGENIC
SBS	Chr1	5492806	G-T	HOMO	INTERGENIC
SBS	Chr10	15468601	C-G	HOMO	INTERGENIC
SBS	Chr10	4612441	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08500
SBS	Chr10	4612442	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08500
SBS	Chr11	14347148	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g25180
SBS	Chr11	23761178	C-T	HET	INTERGENIC
SBS	Chr11	24402534	C-T	HET	INTERGENIC
SBS	Chr11	4546172	G-A	HOMO	INTRON
SBS	Chr11	813916	A-G	HET	UTR_5_PRIME
SBS	Chr12	3148499	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g06510
SBS	Chr12	4962219	G-A	HET	INTERGENIC
SBS	Chr2	24181089	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g39990
SBS	Chr2	24181090	C-A	HET	STOP_GAINED	LOC_Os02g39990
SBS	Chr2	26304188	T-G	HOMO	INTERGENIC
SBS	Chr2	3320695	C-A	HET	INTERGENIC
SBS	Chr2	8044308	T-C	HET	INTRON
SBS	Chr2	9105659	A-G	HET	INTERGENIC
SBS	Chr3	11494658	C-A	HOMO	INTERGENIC
SBS	Chr3	14591058	G-T	HET	INTERGENIC
SBS	Chr3	24675741	T-A	HOMO	INTERGENIC
SBS	Chr3	2553157	C-A	HOMO	INTERGENIC
SBS	Chr3	35859190	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g63470
SBS	Chr3	35859191	A-C	HET	SYNONYMOUS_CODING
SBS	Chr3	5546678	C-T	HOMO	INTERGENIC
SBS	Chr4	21766876	G-A	HET	INTERGENIC
SBS	Chr4	23624265	G-T	HET	INTERGENIC
SBS	Chr4	32347307	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g54340
SBS	Chr4	4433987	C-A	HET	INTERGENIC
SBS	Chr5	8664270	C-T	HOMO	INTERGENIC
SBS	Chr6	16808642	G-C	HET	INTERGENIC
SBS	Chr6	23803414	C-T	HET	INTERGENIC
SBS	Chr6	9697005	G-A	HET	INTERGENIC
SBS	Chr7	11260739	C-A	HET	INTERGENIC
SBS	Chr7	19044128	T-C	HET	INTERGENIC
SBS	Chr7	19156138	C-T	HET	INTERGENIC
SBS	Chr8	16804135	G-A	HET	INTERGENIC
SBS	Chr8	24532370	A-C	HET	INTERGENIC
SBS	Chr9	16081181	T-C	HET	INTRON
SBS	Chr9	16883188	T-A	HET	INTERGENIC
SBS	Chr9	4399123	C-T	HOMO	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	700500	700512	12
Deletion	Chr10	1804277	1804278	1
Deletion	Chr1	1885989	1886001	12
Deletion	Chr2	3652697	3652704	7
Deletion	Chr2	4621336	4621343	7
Deletion	Chr5	5590108	5590128	20
Deletion	Chr10	7264602	7264610	8
Deletion	Chr1	7583842	7583845	3
Deletion	Chr9	8641905	8641907	2
Deletion	Chr1	9803752	9803753	1
Deletion	Chr3	10657379	10657380	1
Deletion	Chr2	11601177	11601182	5
Deletion	Chr7	11832094	11832103	9	LOC_Os07g20490
Deletion	Chr9	12038716	12038718	2
Deletion	Chr1	12167208	12167209	1
Deletion	Chr2	12623127	12623145	18
Deletion	Chr3	16163163	16163164	1
Deletion	Chr2	16688001	17337000	649000	97
Deletion	Chr2	21236066	21236081	15	LOC_Os02g35315
Deletion	Chr4	22832705	22832706	1
Deletion	Chr1	22885533	22885539	6
Deletion	Chr7	23069448	23069465	17
Deletion	Chr4	23313653	23313655	2
Deletion	Chr5	25509479	25509482	3	LOC_Os05g43870
Deletion	Chr1	26845765	26845766	1
Deletion	Chr6	27256071	27256075	4
Deletion	Chr8	28290140	28290149	9	LOC_Os08g45060
Deletion	Chr3	28564253	28564255	2
Deletion	Chr5	28768691	28768692	1
Deletion	Chr1	36399215	36399224	9	LOC_Os01g62850

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11768578	11768579	2
Insertion	Chr1	33401530	33401531	2
Insertion	Chr1	9445153	9445154	2
Insertion	Chr10	17838567	17838570	4
Insertion	Chr10	19133335	19133340	6	LOC_Os10g35770
Insertion	Chr11	1709375	1709375	1
Insertion	Chr11	19595026	19595027	2
Insertion	Chr11	28694685	28694686	2
Insertion	Chr11	28980609	28980614	6
Insertion	Chr12	24620953	24620970	18
Insertion	Chr12	3489260	3489260	1	LOC_Os12g07110
Insertion	Chr12	9389281	9389284	4
Insertion	Chr2	8450981	8450982	2
Insertion	Chr3	1257473	1257474	2
Insertion	Chr3	8186693	8186695	3	LOC_Os03g15000
Insertion	Chr4	32381953	32381961	9	LOC_Os04g54420
Insertion	Chr5	29132340	29132340	1
Insertion	Chr6	20677302	20677303	2
Insertion	Chr6	28902624	28902624	1
Insertion	Chr7	4014182	4014183	2
Insertion	Chr7	4510894	4510895	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	9588202	10426729	LOC_Os07g17650
Inversion	Chr3	23972520	30355667
Inversion	Chr3	23972546	30355683

No Translocation

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