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Mutant Information

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25107927	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g43820
SBS	Chr1	25369840	C-T	HOMO	INTRON
SBS	Chr1	3793586	C-T	HET	INTERGENIC
SBS	Chr1	41040938	T-A	HOMO	INTERGENIC
SBS	Chr10	13654090	T-C	HOMO	INTERGENIC
SBS	Chr10	3543690	A-G	HET	INTERGENIC
SBS	Chr10	6177416	A-G	HET	INTERGENIC
SBS	Chr11	13897742	A-T	HET	INTRON
SBS	Chr11	22348376	C-T	HOMO	INTERGENIC
SBS	Chr11	2453061	T-C	HET	UTR_3_PRIME
SBS	Chr11	8058443	C-T	HET	STOP_GAINED	LOC_Os11g14350
SBS	Chr11	9062916	C-T	HET	INTERGENIC
SBS	Chr11	9382386	A-C	HET	INTERGENIC
SBS	Chr11	9524658	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	13398439	C-T	HET	INTERGENIC
SBS	Chr12	21842663	G-A	HET	INTERGENIC
SBS	Chr12	6921375	C-T	HET	INTERGENIC
SBS	Chr2	16240450	G-A	HOMO	INTERGENIC
SBS	Chr2	18483136	G-A	HET	INTERGENIC
SBS	Chr2	19447307	T-G	HET	INTERGENIC
SBS	Chr2	22139018	C-T	HET	INTERGENIC
SBS	Chr2	26081202	G-A	HET	INTRON
SBS	Chr2	4831052	T-A	HOMO	INTERGENIC
SBS	Chr2	494078	C-T	HET	INTERGENIC
SBS	Chr3	25893631	G-A	HET	INTRON
SBS	Chr3	28351438	A-G	HET	INTERGENIC
SBS	Chr3	31417529	G-T	HET	INTERGENIC
SBS	Chr3	35046935	T-C	HET	INTERGENIC
SBS	Chr3	35046942	T-C	HET	INTERGENIC
SBS	Chr3	35941022	C-G	HET	INTERGENIC
SBS	Chr4	5148768	C-T	HET	INTERGENIC
SBS	Chr4	5148769	G-T	HET	INTERGENIC
SBS	Chr5	19191951	G-A	HET	INTERGENIC
SBS	Chr5	27520583	A-G	HET	INTERGENIC
SBS	Chr6	22677815	C-T	HET	INTERGENIC
SBS	Chr6	29433644	A-T	HET	INTERGENIC
SBS	Chr6	6851913	A-T	HET	INTERGENIC
SBS	Chr7	28706966	T-A	HOMO	INTERGENIC
SBS	Chr7	8716231	A-G	HET	INTERGENIC
SBS	Chr8	19863755	C-T	HET	STOP_GAINED	LOC_Os08g32020
SBS	Chr8	22408872	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	9755523	C-T	HOMO	INTERGENIC
SBS	Chr9	7898890	A-G	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1155629	1155635	6
Deletion	Chr7	3646001	3665000	19000	2
Deletion	Chr12	5811834	5811841	7	LOC_Os12g10800
Deletion	Chr2	6753693	6753694	1
Deletion	Chr1	7218622	7218626	4
Deletion	Chr7	7425181	7425182	1
Deletion	Chr7	7708477	7708489	12
Deletion	Chr3	8763838	8763850	12	LOC_Os03g15880
Deletion	Chr7	8916582	8916583	1
Deletion	Chr11	9382398	9382406	8
Deletion	Chr1	10098199	10098202	3
Deletion	Chr6	11074827	11074831	4
Deletion	Chr12	11176959	11176964	5
Deletion	Chr8	11965314	11965327	13
Deletion	Chr3	13038607	13038608	1
Deletion	Chr1	14259257	14259258	1
Deletion	Chr12	22781462	22781464	2
Deletion	Chr2	22968343	22968344	1
Deletion	Chr1	24897689	24897693	4
Deletion	Chr4	30516951	30516956	5
Deletion	Chr6	30945868	30945883	15
Deletion	Chr3	31863845	31863846	1
Deletion	Chr1	38197452	38197462	10

Insertions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2804884	2804893	10
Insertion	Chr1	4952692	4952722	31
Insertion	Chr11	10474349	10474350	2
Insertion	Chr11	5202905	5202906	2
Insertion	Chr11	913255	913256	2
Insertion	Chr12	12091021	12091032	12
Insertion	Chr12	14434318	14434319	2
Insertion	Chr12	20711488	20711489	2
Insertion	Chr12	22830556	22830556	1
Insertion	Chr2	16611344	16611346	3
Insertion	Chr2	16777344	16777345	2
Insertion	Chr2	17866036	17866037	2
Insertion	Chr2	18371365	18371366	2
Insertion	Chr2	25792440	25792441	2
Insertion	Chr3	25480101	25480102	2
Insertion	Chr4	28175908	28175911	4
Insertion	Chr5	22078777	22078782	6
Insertion	Chr6	22127887	22127888	2
Insertion	Chr6	22140214	22140215	2
Insertion	Chr7	22485073	22485074	2
Insertion	Chr8	16617982	16617985	4
Insertion	Chr8	20070781	20070782	2
Insertion	Chr8	20425353	20425354	2
Insertion	Chr9	21893216	21893224	9	LOC_Os09g37967
Insertion	Chr9	7196896	7196897	2

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	122209	748145	LOC_Os03g01180
Inversion	Chr7	3646119	3677319	2
Inversion	Chr7	3664607	3677321	LOC_Os07g07350
Inversion	Chr6	11541833	15157304
Inversion	Chr6	11541844	14610571
Inversion	Chr6	11567624	15157309
Inversion	Chr7	16597711	16642968
Inversion	Chr7	16598891	16642976
Inversion	Chr1	24082566	25125453
Inversion	Chr1	25125454	25178089

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	376385	Chr2	5676954	LOC_Os08g01640
Translocation	Chr5	1399965	Chr3	122213	2
Translocation	Chr5	1416163	Chr3	748147
Translocation	Chr7	16597749	Chr5	1399970	LOC_Os05g03390
Translocation	Chr7	16598800	Chr5	1416174
Translocation	Chr9	20684121	Chr4	1616396
Translocation	Chr9	20684124	Chr4	1616437

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