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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22499516	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39890
SBS	Chr1	25479488	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g44430
SBS	Chr10	21186833	T-G	HET	INTERGENIC
SBS	Chr11	10912485	C-T	HET	INTRON
SBS	Chr11	13323425	G-C	HOMO	INTERGENIC
SBS	Chr11	16018000	T-G	HET	INTERGENIC
SBS	Chr12	10968642	A-T	HET	INTRON
SBS	Chr12	12396980	G-A	HET	INTERGENIC
SBS	Chr12	20037888	A-G	HET	INTERGENIC
SBS	Chr12	22141428	G-A	HET	INTERGENIC
SBS	Chr12	25331134	C-A	HET	INTRON
SBS	Chr2	11326622	G-A	HOMO	INTERGENIC
SBS	Chr2	26963475	A-G	HOMO	INTRON
SBS	Chr2	33171085	C-T	HOMO	INTRON
SBS	Chr3	32973945	C-T	HOMO	INTERGENIC
SBS	Chr3	5233356	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g10270
SBS	Chr4	17688251	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g29700
SBS	Chr4	26353955	T-C	HOMO	INTERGENIC
SBS	Chr4	33207888	G-A	HET	INTERGENIC
SBS	Chr4	33542829	C-A	HET	SYNONYMOUS_CODING
SBS	Chr6	22871045	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g38600
SBS	Chr6	3475228	A-T	HET	INTRON
SBS	Chr7	27704388	G-A	HET	INTRON
SBS	Chr7	5063267	C-G	HET	INTERGENIC
SBS	Chr8	18791528	T-C	HET	INTERGENIC
SBS	Chr8	21178789	C-T	HET	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	99911	99915	4
Deletion	Chr10	2508084	2508086	2	LOC_Os10g05130
Deletion	Chr7	3761367	3761394	27	LOC_Os07g07540
Deletion	Chr9	5091838	5092199	361
Deletion	Chr1	5605617	5605638	21
Deletion	Chr9	8040249	8040253	4
Deletion	Chr7	9175667	9175682	15	LOC_Os07g15800
Deletion	Chr3	10737671	10737672	1
Deletion	Chr7	12371335	12371336	1
Deletion	Chr7	13238001	13282000	44000	6
Deletion	Chr8	13416213	13416236	23
Deletion	Chr4	14599828	15221926	622098	81
Deletion	Chr12	14898435	14898440	5
Deletion	Chr1	17178511	17178515	4
Deletion	Chr5	17304217	17304218	1
Deletion	Chr2	17760970	17760971	1
Deletion	Chr7	19247912	19247913	1
Deletion	Chr10	19977467	19977468	1
Deletion	Chr4	20084839	20084844	5	LOC_Os04g33200
Deletion	Chr2	20347446	20347457	11
Deletion	Chr12	22517400	22517401	1
Deletion	Chr4	24218852	24218853	1
Deletion	Chr6	24615709	24615713	4
Deletion	Chr7	24679630	24679635	5
Deletion	Chr12	27133543	27133546	3
Deletion	Chr4	29513276	29513278	2

Insertions: 31

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11052183	11052184	2
Insertion	Chr1	11598414	11598422	9
Insertion	Chr1	23798371	23798372	2
Insertion	Chr1	27633653	27633666	14
Insertion	Chr1	38264827	38264827	1
Insertion	Chr10	2189216	2189217	2
Insertion	Chr10	22061707	22061708	2
Insertion	Chr10	2738516	2738531	16
Insertion	Chr11	1623145	1623146	2
Insertion	Chr12	10974998	10975003	6
Insertion	Chr12	25463863	25463866	4
Insertion	Chr2	21772174	21772175	2
Insertion	Chr3	22634780	22634781	2
Insertion	Chr4	16632299	16632302	4
Insertion	Chr4	21130579	21130580	2
Insertion	Chr4	29504626	29504626	1
Insertion	Chr4	312993	312994	2
Insertion	Chr5	14386870	14386881	12
Insertion	Chr5	21765747	21765750	4
Insertion	Chr5	5047071	5047073	3
Insertion	Chr5	7365322	7365323	2
Insertion	Chr6	23632293	23632296	4
Insertion	Chr6	2942475	2942484	10
Insertion	Chr7	1568078	1568106	29
Insertion	Chr7	18932575	18932575	1
Insertion	Chr7	27782212	27782213	2
Insertion	Chr8	10101762	10101763	2
Insertion	Chr8	10173562	10173563	2
Insertion	Chr8	11623803	11623806	4
Insertion	Chr8	4203146	4203146	1
Insertion	Chr9	342074	342104	31

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5740593	5750427

No Translocation

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