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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22499516	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39890
SBS	Chr1	25479488	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g44430
SBS	Chr2	11326622	G-A	HOMO	INTERGENIC
SBS	Chr2	26963475	A-G	HOMO	INTRON
SBS	Chr2	33171085	C-T	HOMO	INTRON
SBS	Chr3	5233356	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g10270
SBS	Chr3	32973945	C-T	HOMO	INTERGENIC
SBS	Chr4	17688251	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g29700
SBS	Chr4	26353955	T-C	HOMO	INTERGENIC
SBS	Chr4	33207888	G-A	HET	INTERGENIC
SBS	Chr4	33542829	C-A	HET	SYNONYMOUS_CODING
SBS	Chr6	3475228	A-T	HET	INTRON
SBS	Chr6	22871045	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g38600
SBS	Chr7	5063267	C-G	HET	INTERGENIC
SBS	Chr7	27704388	G-A	HET	INTRON
SBS	Chr8	18791528	T-C	HET	INTERGENIC
SBS	Chr8	21178789	C-T	HET	INTRON
SBS	Chr10	21186833	T-G	HET	INTERGENIC
SBS	Chr11	10912485	C-T	HET	INTRON
SBS	Chr11	13323425	G-C	HOMO	INTERGENIC
SBS	Chr11	16018000	T-G	HET	INTERGENIC
SBS	Chr12	10968642	A-T	HET	INTRON
SBS	Chr12	12396980	G-A	HET	INTERGENIC
SBS	Chr12	20037888	A-G	HET	INTERGENIC
SBS	Chr12	22141428	G-A	HET	INTERGENIC
SBS	Chr12	25331134	C-A	HET	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	99911	99915	4
Deletion	Chr10	2508084	2508086	2	LOC_Os10g05130
Deletion	Chr7	3761367	3761394	27	LOC_Os07g07540
Deletion	Chr9	5091838	5092199	361
Deletion	Chr1	5605617	5605638	21
Deletion	Chr9	8040249	8040253	4
Deletion	Chr7	9175667	9175682	15	LOC_Os07g15800
Deletion	Chr3	10737671	10737672	1
Deletion	Chr7	12371335	12371336	1
Deletion	Chr7	13238001	13282000	44000	6
Deletion	Chr8	13416213	13416236	23
Deletion	Chr4	14599828	15221926	622098	81
Deletion	Chr12	14898435	14898440	5
Deletion	Chr1	17178511	17178515	4
Deletion	Chr5	17304217	17304218	1
Deletion	Chr2	17760970	17760971	1
Deletion	Chr7	19247912	19247913	1
Deletion	Chr10	19977467	19977468	1
Deletion	Chr4	20084839	20084844	5	LOC_Os04g33200
Deletion	Chr2	20347446	20347457	11
Deletion	Chr12	22517400	22517401	1
Deletion	Chr4	24218852	24218853	1
Deletion	Chr6	24615709	24615713	4
Deletion	Chr7	24679630	24679635	5
Deletion	Chr12	27133543	27133546	3
Deletion	Chr4	29513276	29513278	2

Insertions: 31

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	342074	342104	31
Insertion	Chr7	1568078	1568106	29
Insertion	Chr10	2738516	2738531	16
Insertion	Chr1	27633653	27633666	14
Insertion	Chr5	14386870	14386881	12
Insertion	Chr6	2942475	2942484	10
Insertion	Chr1	11598414	11598422	9
Insertion	Chr12	10974998	10975003	6
Insertion	Chr12	25463863	25463866	4
Insertion	Chr4	16632299	16632302	4
Insertion	Chr5	21765747	21765750	4
Insertion	Chr6	23632293	23632296	4
Insertion	Chr8	11623803	11623806	4
Insertion	Chr5	5047071	5047073	3
Insertion	Chr1	11052183	11052184	2
Insertion	Chr1	23798371	23798372	2
Insertion	Chr10	2189216	2189217	2
Insertion	Chr10	22061707	22061708	2
Insertion	Chr11	1623145	1623146	2
Insertion	Chr2	21772174	21772175	2
Insertion	Chr3	22634780	22634781	2
Insertion	Chr4	312993	312994	2
Insertion	Chr4	21130579	21130580	2
Insertion	Chr5	7365322	7365323	2
Insertion	Chr7	27782212	27782213	2
Insertion	Chr8	10101762	10101763	2
Insertion	Chr8	10173562	10173563	2
Insertion	Chr1	38264827	38264827	1
Insertion	Chr4	29504626	29504626	1
Insertion	Chr7	18932575	18932575	1
Insertion	Chr8	4203146	4203146	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5740593	5750427

No Translocation

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