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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30701995	G-T	HET	INTERGENIC
SBS	Chr1	34226345	C-T	HOMO	INTERGENIC
SBS	Chr1	36337939	C-A	HET	INTERGENIC
SBS	Chr1	36930410	G-A	HET	INTERGENIC
SBS	Chr10	10562304	T-A	HET	INTERGENIC
SBS	Chr10	13150706	C-T	HET	INTERGENIC
SBS	Chr10	16227292	A-C	HET	INTRON
SBS	Chr10	16423707	A-T	HET	INTERGENIC
SBS	Chr10	16423710	G-A	HET	INTERGENIC
SBS	Chr12	20220439	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33460
SBS	Chr12	8546455	C-T	HOMO	INTERGENIC
SBS	Chr2	23163661	T-C	HOMO	INTERGENIC
SBS	Chr2	3850729	T-A	HOMO	INTERGENIC
SBS	Chr2	3850869	A-G	HOMO	INTERGENIC
SBS	Chr3	22394952	C-T	HOMO	INTERGENIC
SBS	Chr3	29104159	G-A	HET	INTERGENIC
SBS	Chr3	31960318	G-A	HET	INTRON
SBS	Chr4	17682770	G-A	HET	INTERGENIC
SBS	Chr4	5810741	C-A	HOMO	UTR_3_PRIME
SBS	Chr4	5810755	A-G	HOMO	UTR_3_PRIME
SBS	Chr5	10081935	C-T	HOMO	INTERGENIC
SBS	Chr5	1704313	C-T	HET	INTERGENIC
SBS	Chr5	25089931	A-T	HOMO	INTERGENIC
SBS	Chr6	11894333	T-A	HET	INTERGENIC
SBS	Chr6	1650930	T-A	HET	SYNONYMOUS_CODING
SBS	Chr7	5282975	A-T	HET	INTERGENIC
SBS	Chr7	5635559	C-T	HET	INTERGENIC
SBS	Chr8	13553796	C-T	HET	INTERGENIC
SBS	Chr8	21269762	A-G	HOMO	INTERGENIC
SBS	Chr8	23529978	G-T	HOMO	INTERGENIC
SBS	Chr8	27784487	C-T	HOMO	INTRON
SBS	Chr8	8683162	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	2172131	A-G	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	241582	241583	1
Deletion	Chr4	2043339	2043340	1
Deletion	Chr5	3654518	3654522	4
Deletion	Chr1	4112195	4112415	220
Deletion	Chr6	5608401	5611417	3016	LOC_Os06g10740
Deletion	Chr4	5870486	5870494	8
Deletion	Chr9	5910866	5910870	4
Deletion	Chr7	8370737	8370738	1
Deletion	Chr2	9609367	9609377	10
Deletion	Chr12	9672411	9672454	43
Deletion	Chr10	10092843	10110785	17942	3
Deletion	Chr10	10093001	10115000	22000	3
Deletion	Chr9	10770669	10770678	9
Deletion	Chr3	11097682	11097684	2	LOC_Os03g19740
Deletion	Chr5	13426072	13426073	1
Deletion	Chr8	17857637	17857640	3	2
Deletion	Chr10	18469956	18469957	1
Deletion	Chr10	19515831	19515833	2
Deletion	Chr2	19684963	19684969	6	LOC_Os02g33110
Deletion	Chr4	20336413	20336421	8
Deletion	Chr4	20666687	20666688	1
Deletion	Chr4	21454333	21454377	44
Deletion	Chr5	22687858	22687860	2
Deletion	Chr5	23322758	23341776	19018	LOC_Os05g39740
Deletion	Chr6	24193531	24193539	8
Deletion	Chr4	26499813	26499814	1
Deletion	Chr2	30802817	30824891	22074	3
Deletion	Chr1	33173054	33173063	9

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	27503156	27503158	3	LOC_Os08g43480

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4112205	8751081	LOC_Os01g15580
Inversion	Chr1	4112411	8751079	LOC_Os01g15580
Inversion	Chr6	4405791	5916768	LOC_Os06g08810
Inversion	Chr12	8255431	8258742	LOC_Os12g14470
Inversion	Chr12	8258743	8259241
Inversion	Chr10	13149108	13262381
Inversion	Chr10	13149137	13262385
Inversion	Chr12	13379536	13403669
Inversion	Chr2	27757258	27814772	LOC_Os02g45630

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3070109	Chr6	5608401

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