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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect
SBS	Chr1	1431727	C-T	HOMO	INTERGENIC
SBS	Chr1	1431729	G-T	HOMO	INTERGENIC
SBS	Chr1	37905411	G-T	HET	INTRON
SBS	Chr1	39197333	C-A	HET	INTERGENIC
SBS	Chr10	18430982	A-T	HET	INTERGENIC
SBS	Chr10	2267999	G-T	HET	SYNONYMOUS_CODING
SBS	Chr11	7936815	A-G	HET	INTERGENIC
SBS	Chr11	9034685	A-T	HET	INTRON
SBS	Chr12	26586218	C-T	HET	INTERGENIC
SBS	Chr12	26606627	A-G	HET	INTERGENIC
SBS	Chr12	461361	A-T	HET	INTERGENIC
SBS	Chr12	9657317	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr3	29437026	A-G	HOMO	INTERGENIC
SBS	Chr3	29438823	C-T	HOMO	INTERGENIC
SBS	Chr3	29438824	G-T	HOMO	INTERGENIC
SBS	Chr4	33190407	G-A	HET	INTERGENIC
SBS	Chr4	7588897	C-T	HET	INTERGENIC
SBS	Chr5	17790378	A-C	HET	INTRON
SBS	Chr5	17947904	T-A	HET	INTERGENIC
SBS	Chr6	5947138	G-T	HOMO	INTERGENIC
SBS	Chr7	12687366	G-T	HET	INTERGENIC
SBS	Chr7	18550731	T-G	HET	INTERGENIC
SBS	Chr8	10922145	A-G	HET	INTERGENIC
SBS	Chr8	12640991	A-G	HET	INTERGENIC
SBS	Chr8	1966973	C-A	HET	INTERGENIC
SBS	Chr8	22736485	A-T	HET	SYNONYMOUS_CODING
SBS	Chr8	23667308	A-T	HOMO	INTERGENIC
SBS	Chr8	28320224	C-T	HET	INTERGENIC
SBS	Chr9	12025861	T-A	HET	INTERGENIC
SBS	Chr9	12069378	G-T	HET	INTRON
SBS	Chr9	12069379	A-T	HET	INTRON
SBS	Chr9	12096901	T-A	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1956064	1956065	1
Deletion	Chr10	2235054	2235055	1
Deletion	Chr1	4909288	4909291	3	LOC_Os01g09570
Deletion	Chr11	7927895	7927908	13
Deletion	Chr11	7934974	7934976	2	LOC_Os11g14180
Deletion	Chr9	11942929	11942930	1
Deletion	Chr8	11966998	11966999	1
Deletion	Chr5	12392399	12392400	1
Deletion	Chr1	12980353	12980357	4
Deletion	Chr11	15504954	15504955	1
Deletion	Chr6	17884130	17884139	9
Deletion	Chr8	18122360	18122362	2
Deletion	Chr10	18236596	18236597	1
Deletion	Chr4	20162537	20162538	1
Deletion	Chr5	21829116	21829118	2
Deletion	Chr12	22876765	22876766	1
Deletion	Chr1	23413567	23413568	1
Deletion	Chr4	26187860	26194813	6953
Deletion	Chr6	26303714	26303720	6
Deletion	Chr1	26845557	26845559	2
Deletion	Chr2	27368304	27368307	3
Deletion	Chr6	27369219	27369224	5	LOC_Os06g45280
Deletion	Chr1	30331552	30331553	1
Deletion	Chr1	30466354	30466358	4

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	14632859	14632862	4
Insertion	Chr1	8938808	8938810	3
Insertion	Chr11	18673792	18673794	3
Insertion	Chr11	22168333	22168334	2
Insertion	Chr11	28794547	28794554	8	LOC_Os11g47730
Insertion	Chr12	23060486	23060486	1
Insertion	Chr12	23060491	23060491	1
Insertion	Chr2	16683162	16683162	1
Insertion	Chr2	18910158	18910175	18
Insertion	Chr2	19293462	19293463	2
Insertion	Chr2	24120906	24120907	2
Insertion	Chr2	24416504	24416505	2
Insertion	Chr2	29867953	29867956	4
Insertion	Chr4	27932931	27932931	1
Insertion	Chr6	9678593	9678594	2
Insertion	Chr7	10920496	10920497	2
Insertion	Chr8	15238874	15238875	2
Insertion	Chr8	8336123	8336124	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10857019	12072337	LOC_Os09g17760

No Translocation

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr4	3962998	26194794	22231796

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