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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3710256	T-A	HET	INTERGENIC
SBS	Chr1	4102379	G-A	HET	INTERGENIC
SBS	Chr1	15873160	G-A	HET	INTERGENIC
SBS	Chr1	17259594	C-T	HET	INTERGENIC
SBS	Chr1	25954459	T-A	HET	INTERGENIC
SBS	Chr1	40092374	G-A	HET	INTERGENIC
SBS	Chr2	8379880	T-A	HET	INTERGENIC
SBS	Chr2	8379910	C-T	HET	INTERGENIC
SBS	Chr2	12542738	G-A	HET	INTERGENIC
SBS	Chr2	12542739	C-A	HET	INTERGENIC
SBS	Chr4	12759603	A-G	HET	INTERGENIC
SBS	Chr4	18102285	A-T	HET	INTERGENIC
SBS	Chr4	18307785	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr4	34368251	A-G	HET	INTERGENIC
SBS	Chr5	1510191	A-T	HOMO	INTERGENIC
SBS	Chr5	15100914	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	19782255	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g33630
SBS	Chr5	20542035	T-C	HOMO	INTERGENIC
SBS	Chr5	20945151	C-T	HET	UTR_3_PRIME
SBS	Chr5	26234872	A-T	HET	INTERGENIC
SBS	Chr5	26234874	A-G	HET	INTERGENIC
SBS	Chr5	26904105	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	8457550	T-C	HET	INTRON
SBS	Chr6	29717888	G-A	HET	INTERGENIC
SBS	Chr6	30180619	C-G	HET	INTRON
SBS	Chr8	12722065	A-T	HET	INTERGENIC
SBS	Chr10	14171010	G-A	HOMO	INTERGENIC
SBS	Chr10	17445069	T-A	HET	INTERGENIC
SBS	Chr10	22584778	G-C	HOMO	INTERGENIC
SBS	Chr11	11783793	G-A	HOMO	INTERGENIC
SBS	Chr11	19351414	G-A	HOMO	INTERGENIC
SBS	Chr12	578624	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g01970

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	151616	151622	6
Deletion	Chr11	151619	151625	6
Deletion	Chr5	1382415	1382418	3	LOC_Os05g03360
Deletion	Chr5	3536315	3536337	22
Deletion	Chr12	3743257	3743268	11
Deletion	Chr2	4960952	4960973	21
Deletion	Chr2	8503884	8505237	1353	LOC_Os02g15230
Deletion	Chr12	8689652	8689655	3
Deletion	Chr2	10058198	10058206	8
Deletion	Chr1	10112493	10112496	3
Deletion	Chr4	11284997	11285000	3
Deletion	Chr2	12433823	12439824	6001
Deletion	Chr5	15883593	15883597	4
Deletion	Chr7	16810364	16810387	23
Deletion	Chr7	16825755	16825764	9
Deletion	Chr10	17765677	17765678	1
Deletion	Chr5	19782265	19782273	8	LOC_Os05g33630
Deletion	Chr9	20799381	20799383	2	LOC_Os09g36130
Deletion	Chr11	22427105	22427108	3
Deletion	Chr4	22449375	22449379	4
Deletion	Chr6	23326467	23326479	12
Deletion	Chr4	23889973	23889982	9
Deletion	Chr5	26222377	26222395	18	LOC_Os05g45160
Deletion	Chr4	27713672	27713679	7
Deletion	Chr4	27717612	27717613	1
Deletion	Chr7	28975644	28975645	1
Deletion	Chr1	33810725	33810730	5
Deletion	Chr1	38675550	38675554	4
Deletion	Chr1	39197105	39197112	7

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	7875341	7875342	2
Insertion	Chr1	42960941	42960963	23
Insertion	Chr2	18347204	18347214	11
Insertion	Chr1	42447742	42447748	7
Insertion	Chr1	6154084	6154087	4
Insertion	Chr3	25360235	25360238	4
Insertion	Chr8	20486314	20486317	4
Insertion	Chr1	9584101	9584103	3
Insertion	Chr1	14196193	14196195	3
Insertion	Chr7	22506885	22506887	3
Insertion	Chr1	23445831	23445832	2
Insertion	Chr12	9526762	9526763	2
Insertion	Chr2	18883646	18883647	2
Insertion	Chr4	20356376	20356377	2
Insertion	Chr9	8981681	8981682	2
Insertion	Chr5	22563253	22563253	1
Insertion	Chr7	28355974	28355974	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	183364	3573473	LOC_Os04g01240
Inversion	Chr4	183376	3573505	LOC_Os04g01240
Inversion	Chr9	11896083	11969845	2
Inversion	Chr11	12980799	14086395	LOC_Os11g22570

No Translocation

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