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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14080406	G-A	HET	UTR_3_PRIME
SBS	Chr10	19285214	T-G	HET	INTERGENIC
SBS	Chr10	20303969	G-A	HET	INTERGENIC
SBS	Chr10	20637627	C-T	HET	INTERGENIC
SBS	Chr11	20875595	G-T	HET	INTERGENIC
SBS	Chr11	23859302	T-A	HET	UTR_3_PRIME
SBS	Chr11	28737942	T-C	HET	INTERGENIC
SBS	Chr12	12724846	G-C	HET	INTERGENIC
SBS	Chr12	15276846	G-A	HET	INTRON
SBS	Chr12	16435300	A-G	HET	INTERGENIC
SBS	Chr12	17680067	A-G	HET	INTERGENIC
SBS	Chr2	10454053	G-A	HET	INTERGENIC
SBS	Chr2	15117924	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25800
SBS	Chr2	17610446	C-T	HET	INTRON
SBS	Chr2	35881604	T-A	HOMO	INTRON
SBS	Chr3	24125902	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	14547660	G-A	HOMO	INTERGENIC
SBS	Chr6	15511240	C-T	HOMO	INTERGENIC
SBS	Chr6	17659908	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g30520
SBS	Chr8	24992899	A-C	HET	INTERGENIC
SBS	Chr8	5770850	A-C	HET	INTERGENIC
SBS	Chr9	20759320	T-A	HET	INTERGENIC
SBS	Chr9	6321943	G-A	HOMO	INTERGENIC
SBS	Chr9	9358395	G-A	HOMO	INTRON

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	9273234	9273240	6
Deletion	Chr9	11902200	11902201	1
Deletion	Chr4	14675044	14675057	13
Deletion	Chr2	15124001	15137000	13000	3
Deletion	Chr9	15509436	15509445	9
Deletion	Chr3	15872001	15893000	21000	5
Deletion	Chr12	15966602	15966616	14	LOC_Os12g27210
Deletion	Chr3	16650974	16650977	3
Deletion	Chr1	21202534	21202535	1
Deletion	Chr1	21978346	21978348	2
Deletion	Chr12	25412373	25413678	1305
Deletion	Chr6	28742961	28742971	10	LOC_Os06g47460
Deletion	Chr4	29210431	29210432	1
Deletion	Chr2	35807503	35807504	1	LOC_Os02g58580

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	9578078	9578078	1
Insertion	Chr7	26687478	26687478	1
Insertion	Chr7	4138742	4138742	1
Insertion	Chr8	2792803	2792806	4

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2583892	5515119	LOC_Os06g05720
Inversion	Chr6	2585087	5515120	LOC_Os06g05720
Inversion	Chr2	15118145	17762118	2
Inversion	Chr2	15118165	15137299	LOC_Os02g25800
Inversion	Chr10	22732918	23036132	2
Inversion	Chr10	23036148	23117016	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4449112	Chr2	15117259	LOC_Os02g25800
Translocation	Chr8	4449116	Chr2	17761611	LOC_Os02g29870
Translocation	Chr7	15457939	Chr6	2583899	LOC_Os06g05720
Translocation	Chr12	25412400	Chr10	23116992	LOC_Os10g42870
Translocation	Chr12	25413676	Chr10	22732928	LOC_Os10g42210

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