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| Mutant Information |
|---|
| Mutant Name | FN-238 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-238 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26113897 | G-A | HOMO | UTR_5_PRIME | |
| SBS | Chr1 | 2665738 | C-A | HET | INTRON | |
| SBS | Chr1 | 32511141 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g56390 |
| SBS | Chr1 | 33943386 | C-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 40151044 | T-G | HET | INTERGENIC | |
| SBS | Chr1 | 5072860 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 15446881 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 15446882 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 18139043 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 7587452 | G-A | HOMO | UTR_5_PRIME | |
| SBS | Chr2 | 33193390 | A-T | HET | INTRON | |
| SBS | Chr2 | 475052 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 8431022 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 23197299 | A-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr4 | 23665718 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g39710 |
| SBS | Chr6 | 2421030 | C-T | HOMO | INTRON | |
| SBS | Chr6 | 29844580 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 16838279 | G-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 16856232 | C-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 10978865 | T-A | HET | INTRON | |
| SBS | Chr8 | 13344735 | A-T | HET | INTRON | |
| SBS | Chr8 | 2416233 | C-A | HET | INTRON | |
| SBS | Chr8 | 501825 | C-A | HET | INTERGENIC | |
| SBS | Chr9 | 3312913 | C-A | HET | INTERGENIC | |
| SBS | Chr9 | 5575273 | G-A | HET | SYNONYMOUS_CODING |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 1305830 | 1305834 | 4 | |
| Deletion | Chr12 | 4642319 | 4642321 | 2 | |
| Deletion | Chr6 | 5187508 | 5187509 | 1 | LOC_Os06g10140 |
| Deletion | Chr8 | 7801907 | 7801915 | 8 | |
| Deletion | Chr7 | 8607270 | 8607274 | 4 | |
| Deletion | Chr12 | 8681489 | 8681490 | 1 | |
| Deletion | Chr8 | 9223844 | 9223848 | 4 | |
| Deletion | Chr11 | 14219866 | 14219879 | 13 | |
| Deletion | Chr7 | 14478999 | 14479005 | 6 | LOC_Os07g25340 |
| Deletion | Chr6 | 21302440 | 21302473 | 33 | |
| Deletion | Chr7 | 24144354 | 24144355 | 1 | |
| Deletion | Chr1 | 26113189 | 26113387 | 198 | |
| Deletion | Chr2 | 28341297 | 28341312 | 15 | |
| Deletion | Chr6 | 28358714 | 28358716 | 2 | |
| Deletion | Chr7 | 28455395 | 28455583 | 188 | |
| Deletion | Chr4 | 32695894 | 32695898 | 4 |
No Insertion
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 13388271 | 13418309 | LOC_Os08g22260 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 6205492 | Chr5 | 5464076 | |
| Translocation | Chr4 | 25591065 | Chr3 | 3621510 | LOC_Os03g07080 |
| Translocation | Chr4 | 25619666 | Chr3 | 3621780 | LOC_Os03g07080 |