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Mutant Information

Mutant Name	FN-24 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-24 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr4	15079897	C-T	Homo	INTERGENIC
SBS	Chr9	19292148	C-A	Homo	INTERGENIC
SBS	Chr10	7769718	C-T	Homo	INTERGENIC
SBS	Chr12	22330083	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g36490

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1058495	1058502	7
Deletion	Chr2	1151948	1151951	3	LOC_Os02g02940
Deletion	Chr5	3041886	3041893	7
Deletion	Chr12	3850471	3850476	5
Deletion	Chr9	5828439	5828448	9
Deletion	Chr2	8094549	8094555	6
Deletion	Chr9	8872531	8872538	7
Deletion	Chr4	9334910	9334916	6
Deletion	Chr10	9734220	9734228	8	LOC_Os10g19120
Deletion	Chr10	9946241	9946242	1
Deletion	Chr1	11858726	11858756	30	LOC_Os01g21240
Deletion	Chr12	11898558	11898559	1
Deletion	Chr5	12220758	12220759	1
Deletion	Chr10	13285476	13285478	2	LOC_Os10g25660
Deletion	Chr4	28240382	28240383	1
Deletion	Chr2	29353414	29353439	25
Deletion	Chr2	34504247	34504268	21	LOC_Os02g56360

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	15549727	15549727	1
Insertion	Chr2	4311160	4311160	1
Insertion	Chr5	14323764	14323764	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6059492	6695906	LOC_Os08g11410
Inversion	Chr2	32680449	32972064	LOC_Os02g53384

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	19656093	Chr2	20839468