Search Results
| Mutant Information |
|---|
| Mutant Name | FN-240 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-240 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20557833 | A-C | HOMO | INTRON | |
| SBS | Chr1 | 38044697 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 38342111 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 1057468 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 18089974 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 32980557 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 6934252 | C-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 9103162 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 21158554 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g38110 |
| SBS | Chr4 | 3323264 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g06360 |
| SBS | Chr4 | 9612102 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 35355933 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 4082372 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 13629430 | A-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 13629438 | A-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 19735737 | G-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 19735738 | A-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 22276363 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 7965991 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 8200613 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 9853030 | C-G | HET | INTRON | |
| SBS | Chr7 | 14160448 | C-G | HET | INTERGENIC | |
| SBS | Chr7 | 27181711 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 19014384 | C-T | HOMO | INTRON | |
| SBS | Chr9 | 5461960 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 9572171 | T-G | HET | INTERGENIC | |
| SBS | Chr11 | 24724690 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g41230 |
| SBS | Chr12 | 23768261 | T-A | HET | INTERGENIC |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1050453 | 1050457 | 4 | |
| Deletion | Chr8 | 1157104 | 1157105 | 1 | |
| Deletion | Chr2 | 1375628 | 1375629 | 1 | |
| Deletion | Chr5 | 4646946 | 4647022 | 76 | |
| Deletion | Chr12 | 4947642 | 4947649 | 7 | |
| Deletion | Chr4 | 8000053 | 8000070 | 17 | |
| Deletion | Chr12 | 8564882 | 8564883 | 1 | |
| Deletion | Chr5 | 14109155 | 14109181 | 26 | LOC_Os05g24430 |
| Deletion | Chr5 | 14122001 | 14134000 | 12000 | 3 |
| Deletion | Chr1 | 26881768 | 26881772 | 4 | |
| Deletion | Chr2 | 30296885 | 30297141 | 256 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 28724131 | 28724131 | 1 | LOC_Os01g49990 |
| Insertion | Chr4 | 16415142 | 16415145 | 4 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 4132704 | 4366985 | |
| Inversion | Chr7 | 8812692 | 8879585 | LOC_Os07g15280 |
| Inversion | Chr10 | 9840788 | 9930867 | 2 |
| Inversion | Chr10 | 9840800 | 9930874 | 2 |
| Inversion | Chr5 | 13841946 | 13889025 | LOC_Os05g24020 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 24063096 | Chr5 | 1071769 | LOC_Os12g39110 |
| Translocation | Chr12 | 24063103 | Chr5 | 1073718 | LOC_Os12g39110 |