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| Mutant Information |
|---|
| Mutant Name | FN-241 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-241 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype Changes (Hover to Zoom-In) |  |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19662749 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g35540 |
| SBS | Chr1 | 30432103 | G-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 31833974 | G-A | HET | INTRON | |
| SBS | Chr10 | 15475735 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 6744846 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 27777349 | A-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 2882704 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 20042664 | T-A | HET | INTRON | |
| SBS | Chr2 | 28321580 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 7408759 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 28627587 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g48094 |
| SBS | Chr4 | 32789740 | T-C | HOMO | INTRON | |
| SBS | Chr4 | 3301668 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 33140746 | G-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 8309 | G-A | HET | INTRON | |
| SBS | Chr5 | 10157220 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g17650 |
| SBS | Chr5 | 20758489 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 2564211 | T-C | HOMO | INTERGENIC | |
| SBS | Chr6 | 1072584 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 12524160 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 1041321 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 20985606 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 14573237 | C-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 14573242 | A-C | HOMO | INTERGENIC | |
| SBS | Chr9 | 1520027 | A-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 16905094 | A-T | HOMO | INTERGENIC |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 903401 | 903406 | 5 | |
| Deletion | Chr1 | 11088771 | 11088779 | 8 | |
| Deletion | Chr12 | 12766941 | 12766942 | 1 | |
| Deletion | Chr1 | 13670309 | 13670328 | 19 | |
| Deletion | Chr10 | 16318275 | 16318284 | 9 | |
| Deletion | Chr10 | 16334340 | 16334341 | 1 | |
| Deletion | Chr8 | 17754425 | 17754438 | 13 | |
| Deletion | Chr4 | 20596762 | 20596766 | 4 | |
| Deletion | Chr2 | 20999001 | 21007000 | 8000 | LOC_Os02g35010 |
| Deletion | Chr9 | 22552392 | 22552410 | 18 | |
| Deletion | Chr12 | 22885201 | 22885216 | 15 | |
| Deletion | Chr12 | 23631372 | 23631381 | 9 | |
| Deletion | Chr6 | 25668840 | 25668841 | 1 | |
| Deletion | Chr6 | 26626474 | 26626478 | 4 | |
| Deletion | Chr8 | 27150241 | 27150391 | 150 | |
| Deletion | Chr5 | 28928903 | 28928921 | 18 | |
| Deletion | Chr3 | 33346428 | 33346429 | 1 | LOC_Os03g58570 |
| Deletion | Chr3 | 35034653 | 35034660 | 7 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 30218057 | 30218057 | 1 | |
| Insertion | Chr7 | 2651078 | 2651078 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 8486343 | 20431740 | |
| Inversion | Chr2 | 20999257 | 21011355 | |
| Inversion | Chr2 | 21007471 | 21011361 | LOC_Os02g35010 |
No Translocation