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| Mutant Information |
|---|
| Mutant Name | FN-243 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-243 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 22268165 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 22432223 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 491467 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g01900 |
| SBS | Chr10 | 11335890 | A-G | HOMO | INTERGENIC | |
| SBS | Chr10 | 15468601 | C-G | HOMO | INTERGENIC | |
| SBS | Chr10 | 20402876 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 24744970 | C-A | HET | INTRON | |
| SBS | Chr11 | 25468898 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 2789381 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g05930 |
| SBS | Chr2 | 14657972 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 26304188 | T-G | HET | INTERGENIC | |
| SBS | Chr2 | 30368203 | C-A | HET | INTERGENIC | |
| SBS | Chr3 | 25693366 | C-T | HET | INTRON | |
| SBS | Chr3 | 34658021 | G-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 34658022 | T-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 34658024 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 23624265 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 27068285 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 33205949 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 6196847 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g11350 |
| SBS | Chr5 | 15026893 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 17469388 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 23675654 | A-G | HET | INTRON | |
| SBS | Chr5 | 8664270 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 16386469 | C-A | HET | UTR_3_PRIME | |
| SBS | Chr7 | 18377446 | T-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 19044128 | T-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 19156138 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 10484590 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g17130 |
| SBS | Chr8 | 24898526 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 4812031 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 8807498 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 3192818 | C-T | HET | SYNONYMOUS_CODING |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 3867543 | 3867554 | 11 | |
| Deletion | Chr12 | 4246875 | 4246896 | 21 | LOC_Os12g08340 |
| Deletion | Chr5 | 6217001 | 6349000 | 132000 | 18 |
| Deletion | Chr5 | 6412223 | 6412224 | 1 | |
| Deletion | Chr11 | 8439461 | 8439462 | 1 | |
| Deletion | Chr2 | 8709973 | 8709996 | 23 | |
| Deletion | Chr10 | 9841091 | 9841092 | 1 | |
| Deletion | Chr6 | 14724001 | 14762000 | 38000 | 7 |
| Deletion | Chr3 | 16170513 | 16170519 | 6 | |
| Deletion | Chr5 | 18706226 | 18706251 | 25 | |
| Deletion | Chr4 | 19460790 | 19460791 | 1 | |
| Deletion | Chr12 | 20098987 | 20098988 | 1 | |
| Deletion | Chr1 | 26154001 | 26207000 | 53000 | 9 |
| Deletion | Chr1 | 26218001 | 26414000 | 196000 | 26 |
| Deletion | Chr3 | 32636191 | 32636192 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 12925590 | 12925591 | 2 | |
| Insertion | Chr1 | 32681762 | 32681763 | 2 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 6157181 | Chr1 | 41301854 | 2 |