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| Mutant Information |
|---|
| Mutant Name | FN-245 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-245 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12561500 | T-C | HOMO | INTERGENIC | |
| SBS | Chr1 | 28287880 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 33779982 | G-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 42670366 | C-T | HET | INTRON | |
| SBS | Chr10 | 17861421 | G-A | HET | INTRON | |
| SBS | Chr11 | 21132362 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 12648583 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 8048623 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 14320834 | T-A | HET | INTERGENIC | |
| SBS | Chr2 | 25498107 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr2 | 27088884 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 27849371 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 12744908 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 33714075 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 21664196 | T-G | HOMO | UTR_5_PRIME | |
| SBS | Chr4 | 3154752 | G-T | HET | INTRON | |
| SBS | Chr5 | 16361691 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 17840811 | C-A | HET | INTERGENIC | |
| SBS | Chr5 | 22808004 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 16000489 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 6696161 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 6803472 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 18953400 | G-T | HOMO | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 1370214 | 1370217 | 3 | |
| Deletion | Chr2 | 1967573 | 1967575 | 2 | |
| Deletion | Chr5 | 2815446 | 2815447 | 1 | |
| Deletion | Chr2 | 6525037 | 6525038 | 1 | |
| Deletion | Chr3 | 9428811 | 9428812 | 1 | |
| Deletion | Chr8 | 10276001 | 10276009 | 8 | |
| Deletion | Chr1 | 11002579 | 11002583 | 4 | |
| Deletion | Chr4 | 12619681 | 12619682 | 1 | |
| Deletion | Chr10 | 14240194 | 14240195 | 1 | LOC_Os10g27020 |
| Deletion | Chr3 | 14638001 | 14665000 | 27000 | 3 |
| Deletion | Chr2 | 14893668 | 14893679 | 11 | |
| Deletion | Chr7 | 19121739 | 19121747 | 8 | |
| Deletion | Chr4 | 19852803 | 19852810 | 7 | LOC_Os04g32880 |
| Deletion | Chr8 | 21050044 | 21050046 | 2 | |
| Deletion | Chr3 | 23833646 | 23833648 | 2 | |
| Deletion | Chr3 | 24393845 | 24393848 | 3 | |
| Deletion | Chr6 | 27113257 | 27113269 | 12 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 2404767 | 2404771 | 5 | |
| Insertion | Chr1 | 8857518 | 8857519 | 2 | |
| Insertion | Chr5 | 11408682 | 11408683 | 2 | |
| Insertion | Chr7 | 25690035 | 25690035 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 7243854 | 7697054 | |
| Inversion | Chr8 | 18702951 | 18705574 | |
| Inversion | Chr8 | 18702962 | 18705586 |
No Translocation