Search Results
| Mutant Information |
|---|
| Mutant Name | FN-247 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-247 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr2 | 869422 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 10467454 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g18040 |
| SBS | Chr2 | 31367588 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 32914661 | A-T | HOMO | INTRON | |
| SBS | Chr4 | 2839931 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 27610504 | C-A | HET | INTRON | |
| SBS | Chr5 | 5688480 | T-A | HET | INTRON | |
| SBS | Chr6 | 6987677 | A-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 14397566 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 17193382 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 15444095 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g26730 |
| SBS | Chr7 | 17733716 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 352161 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr8 | 352162 | G-T | HET | UTR_3_PRIME | |
| SBS | Chr8 | 14076997 | G-T | HET | INTERGENIC | |
| SBS | Chr9 | 12081052 | T-C | HOMO | INTRON | |
| SBS | Chr10 | 5619500 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g10214 |
| SBS | Chr11 | 11007314 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 15542702 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 16502732 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 17481232 | T-A | HET | INTRON | |
| SBS | Chr12 | 7236124 | G-A | HOMO | INTRON | |
| SBS | Chr12 | 15729029 | A-T | HET | INTRON | |
| SBS | Chr12 | 24242495 | C-T | HOMO | INTERGENIC |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 15650 | 15956 | 306 | |
| Deletion | Chr2 | 5047001 | 5239000 | 192000 | 29 |
| Deletion | Chr9 | 8094001 | 8164000 | 70000 | 6 |
| Deletion | Chr11 | 17415284 | 17415286 | 2 | |
| Deletion | Chr11 | 18772573 | 18772581 | 8 | LOC_Os11g31940 |
| Deletion | Chr2 | 23035264 | 23035266 | 2 | |
| Deletion | Chr8 | 24728259 | 24728260 | 1 | |
| Deletion | Chr2 | 25236669 | 25236674 | 5 | |
| Deletion | Chr3 | 29122928 | 29122932 | 4 | |
| Deletion | Chr4 | 31305425 | 31335392 | 29967 | 4 |
| Deletion | Chr3 | 32270690 | 32270696 | 6 | |
| Deletion | Chr1 | 32980588 | 32980597 | 9 | |
| Deletion | Chr4 | 34600032 | 34603018 | 2986 | LOC_Os04g58100 |
| Deletion | Chr2 | 35256460 | 35256464 | 4 | LOC_Os02g57540 |
No Insertion
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 19461260 | 19462228 | |
| Inversion | Chr11 | 19461273 | 19462242 | |
| Inversion | Chr1 | 21414773 | 21823664 | LOC_Os01g38890 |
| Inversion | Chr1 | 21414793 | 21823675 | LOC_Os01g38890 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 9757756 | Chr4 | 34600030 | LOC_Os08g16010 |
| Translocation | Chr8 | 10167266 | Chr4 | 34603013 | LOC_Os04g58100 |
| Translocation | Chr8 | 17819113 | Chr1 | 23360020 | 2 |
| Translocation | Chr4 | 31305795 | Chr3 | 28340974 | LOC_Os04g52614 |