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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12512727	C-T	HOMO	INTRON
SBS	Chr1	21717642	A-G	HET	INTERGENIC
SBS	Chr1	24958491	G-C	HOMO	INTERGENIC
SBS	Chr1	25132925	T-C	HET	UTR_5_PRIME
SBS	Chr1	30073941	C-T	HET	INTERGENIC
SBS	Chr2	8535015	C-T	HOMO	INTERGENIC
SBS	Chr3	7373223	C-T	HET	INTERGENIC
SBS	Chr3	9025004	C-A	HET	INTERGENIC
SBS	Chr3	15822283	C-T	HET	INTERGENIC
SBS	Chr3	26339321	T-G	HOMO	INTRON
SBS	Chr3	30093921	G-A	HET	INTERGENIC
SBS	Chr4	8857902	G-C	HOMO	INTERGENIC
SBS	Chr4	16209704	T-C	HOMO	INTRON
SBS	Chr5	22328632	A-C	HOMO	INTERGENIC
SBS	Chr6	7043733	C-A	HET	UTR_3_PRIME
SBS	Chr6	10345789	G-A	HET	INTRON
SBS	Chr7	10727347	G-A	HOMO	INTRON
SBS	Chr7	15151937	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g26360
SBS	Chr7	16987927	T-C	HET	INTERGENIC
SBS	Chr7	18741373	C-T	HET	INTRON
SBS	Chr7	26833401	T-A	HOMO	INTRON
SBS	Chr7	29276486	A-T	HET	INTRON
SBS	Chr8	12359704	G-T	HOMO	INTERGENIC
SBS	Chr9	11711841	T-C	HET	INTERGENIC
SBS	Chr9	11790680	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g19700
SBS	Chr9	15885703	A-G	HET	INTERGENIC
SBS	Chr9	18836595	C-T	HET	INTERGENIC
SBS	Chr10	4934277	C-A	HOMO	INTERGENIC
SBS	Chr10	9602802	G-T	HET	INTERGENIC
SBS	Chr11	14995971	C-A	HOMO	INTERGENIC
SBS	Chr11	21668664	T-A	HET	INTERGENIC
SBS	Chr12	11139203	A-G	HET	INTRON
SBS	Chr12	13452179	G-C	HET	INTERGENIC
SBS	Chr12	25117185	T-C	HOMO	INTRON
SBS	Chr12	26070815	A-T	HOMO	INTERGENIC
SBS	Chr12	26481265	G-A	HOMO	INTRON

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	455865	455884	19
Deletion	Chr1	847656	847657	1
Deletion	Chr12	2213001	2919000	706000	106
Deletion	Chr5	2608852	2608853	1
Deletion	Chr2	2995897	2998011	2114	LOC_Os02g06010
Deletion	Chr10	3478370	3478371	1
Deletion	Chr3	4138489	4138490	1
Deletion	Chr3	5180534	5180535	1
Deletion	Chr1	8374173	8374183	10
Deletion	Chr2	8449320	8449325	5
Deletion	Chr9	11863001	12670000	807000	120
Deletion	Chr8	15041423	15041435	12
Deletion	Chr9	15955234	15955236	2
Deletion	Chr9	16021212	16021231	19
Deletion	Chr2	18620001	18620002	1
Deletion	Chr11	20001978	20001983	5
Deletion	Chr3	21274864	21274866	2
Deletion	Chr9	22515207	22515220	13	LOC_Os09g39200

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	15691606	15691607	2
Insertion	Chr6	6891913	6891915	3
Insertion	Chr10	21491225	21491226	2
Insertion	Chr2	21141579	21141579	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	6663473	Chr2	24434758	LOC_Os02g40340
Translocation	Chr12	9135217	Chr1	10793428	2

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