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Mutant Information |
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Mutant Name | FN-25 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-25 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 8
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 28566540 | A-T | Homo | INTERGENIC | |
SBS | Chr4 | 10792584 | C-T | Homo | SYNONYMOUS_CODING | |
SBS | Chr4 | 31304024 | G-A | Homo | SYNONYMOUS_CODING | |
SBS | Chr8 | 15629369 | T-A | Homo | INTERGENIC | |
SBS | Chr8 | 17619796 | A-G | Homo | INTERGENIC | |
SBS | Chr8 | 20593008 | T-C | Homo | INTRON | |
SBS | Chr9 | 7364849 | T-C | Homo | INTERGENIC | |
SBS | Chr9 | 8509115 | T-A | Homo | INTERGENIC |
Deletions: 21
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 1759361 | 1759363 | 2 | LOC_Os04g03860 |
Deletion | Chr8 | 3009302 | 3009304 | 2 | |
Deletion | Chr7 | 4154485 | 4154489 | 4 | |
Deletion | Chr11 | 6027398 | 6030939 | 3541 | LOC_Os11g10920 |
Deletion | Chr8 | 8572496 | 8572504 | 8 | |
Deletion | Chr11 | 8779533 | 8779543 | 10 | |
Deletion | Chr6 | 8791108 | 8791109 | 1 | |
Deletion | Chr7 | 12859410 | 12859419 | 9 | |
Deletion | Chr11 | 16013711 | 16013719 | 8 | LOC_Os11g27810 |
Deletion | Chr11 | 18074235 | 18074236 | 1 | |
Deletion | Chr10 | 18368092 | 18368113 | 21 | |
Deletion | Chr4 | 18771391 | 18771393 | 2 | |
Deletion | Chr6 | 21564047 | 21564054 | 7 | LOC_Os06g36680 |
Deletion | Chr10 | 22348579 | 22348583 | 4 | |
Deletion | Chr4 | 23224126 | 23224137 | 11 | |
Deletion | Chr1 | 23722001 | 23728000 | 6000 | LOC_Os01g41870 |
Deletion | Chr3 | 25085761 | 25085764 | 3 | |
Deletion | Chr11 | 25185311 | 25185312 | 1 | |
Deletion | Chr7 | 25424652 | 25424653 | 1 | |
Deletion | Chr11 | 25969320 | 25969329 | 9 | |
Deletion | Chr1 | 29273209 | 29273210 | 1 | LOC_Os01g50940 |
Insertions: 7
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr11 | 8560146 | 8644330 | LOC_Os11g15290 |
No Translocation