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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20210239	A-T	HET	INTERGENIC
SBS	Chr1	22320049	C-G	HET	SYNONYMOUS_CODING
SBS	Chr1	42285388	T-C	HET	INTERGENIC
SBS	Chr1	6979294	T-A	HET	INTERGENIC
SBS	Chr10	12527264	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24420
SBS	Chr10	3788314	A-G	HET	INTERGENIC
SBS	Chr10	4314657	A-G	HET	INTERGENIC
SBS	Chr10	7350933	C-T	HET	INTERGENIC
SBS	Chr11	15907795	A-G	HET	INTERGENIC
SBS	Chr11	23795522	T-A	HOMO	UTR_3_PRIME
SBS	Chr12	19782247	A-G	HOMO	INTRON
SBS	Chr2	18330834	G-A	HOMO	INTRON
SBS	Chr3	30442954	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g53080
SBS	Chr4	27075873	A-T	HET	INTERGENIC
SBS	Chr4	32485714	G-T	HET	INTERGENIC
SBS	Chr4	6184623	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g11330
SBS	Chr5	23111893	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	9096672	G-T	HOMO	INTERGENIC
SBS	Chr6	14159467	G-A	HOMO	INTERGENIC
SBS	Chr6	14159468	G-A	HOMO	INTERGENIC
SBS	Chr6	19744190	A-T	HOMO	UTR_3_PRIME
SBS	Chr6	19744191	A-T	HOMO	UTR_3_PRIME
SBS	Chr7	18353718	G-A	HOMO	INTERGENIC
SBS	Chr9	8374613	C-T	HOMO	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	521418	521459	41	LOC_Os07g01860
Deletion	Chr3	1795771	1795777	6
Deletion	Chr6	2276721	2276724	3
Deletion	Chr3	2794292	2794303	11
Deletion	Chr8	3235671	3235674	3
Deletion	Chr3	7000986	7000990	4
Deletion	Chr6	8517417	8517431	14
Deletion	Chr11	8935890	8935903	13
Deletion	Chr2	11707906	11881980	174074	25
Deletion	Chr3	14095628	14095629	1	LOC_Os03g24730
Deletion	Chr10	16180542	16180576	34
Deletion	Chr3	17050035	17050036	1
Deletion	Chr8	17724740	17724741	1	LOC_Os08g28960
Deletion	Chr1	19210001	19483000	273000	36
Deletion	Chr1	19493001	19556000	63000	11
Deletion	Chr1	19566001	19730000	164000	25
Deletion	Chr7	20793605	20793607	2
Deletion	Chr9	21946849	21946859	10	LOC_Os09g38090
Deletion	Chr12	23094996	23094998	2
Deletion	Chr3	23566778	23566779	1
Deletion	Chr6	24695032	24715077	20045	4
Deletion	Chr12	25221373	25293429	72056	12
Deletion	Chr12	25825179	25825189	10
Deletion	Chr11	27685204	27685215	11
Deletion	Chr3	33150294	33150306	12
Deletion	Chr3	35404428	35404430	2
Deletion	Chr1	36473803	36473816	13
Deletion	Chr1	42427852	42427853	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	17020788	17020788	1
Insertion	Chr4	6703644	6703644	1
Insertion	Chr8	18634007	18634007	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	9853095	9909410	LOC_Os07g16790
Inversion	Chr6	24521525	24526153	LOC_Os06g41060
Inversion	Chr6	24526238	24610465	LOC_Os06g41060
Inversion	Chr3	28044740	29225397	LOC_Os03g49240
Inversion	Chr1	36424645	37282260	LOC_Os01g64200

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	27595312	Chr4	35421713	LOC_Os08g43654
Translocation	Chr8	27595313	Chr4	35419660	2

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