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Mutant Information

Mutant Name	FN-255 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-255 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10060995	T-A	HET	INTERGENIC
SBS	Chr2	25859544	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g42970
SBS	Chr2	26595798	G-C	HET	INTERGENIC
SBS	Chr2	27055361	C-T	HOMO	INTRON
SBS	Chr2	35377862	T-C	HET	INTRON
SBS	Chr3	9326362	A-G	HET	INTERGENIC
SBS	Chr3	9836826	G-A	HOMO	INTERGENIC
SBS	Chr3	33088496	G-A	HET	INTERGENIC
SBS	Chr4	23249415	C-A	HET	INTERGENIC
SBS	Chr5	4139690	C-T	HOMO	INTERGENIC
SBS	Chr6	16060524	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g28260
SBS	Chr8	22711627	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g36030
SBS	Chr9	8081674	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g13790
SBS	Chr10	9009080	C-T	HET	INTRON
SBS	Chr11	1117111	T-C	HET	INTERGENIC
SBS	Chr11	24198606	A-G	HOMO	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	214019	214022	3	LOC_Os06g01350
Deletion	Chr5	13929620	13929621	1	LOC_Os05g24150
Deletion	Chr5	14980923	14980929	6	LOC_Os05g25750
Deletion	Chr4	18901533	18901537	4
Deletion	Chr4	19115084	19115085	1
Deletion	Chr4	20587937	20587972	35
Deletion	Chr11	25322361	25322367	6	LOC_Os11g42070
Deletion	Chr2	27097940	27097960	20	LOC_Os02g44720
Deletion	Chr2	29033892	29033893	1
Deletion	Chr6	30551323	30551326	3
Deletion	Chr4	31184663	31184665	2
Deletion	Chr1	31635748	31635749	1	LOC_Os01g55020
Deletion	Chr1	36668427	36668450	23

No Insertion

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1252647	1524535
Inversion	Chr10	12920952	13056526
Inversion	Chr10	12920996	13056536

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	658978	Chr1	1524547	LOC_Os06g02170