Search Results
| Mutant Information |
|---|
| Mutant Name | FN-256 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-256 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 28919509 | A-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 15128365 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 17605419 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 18073742 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr2 | 30145298 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 5868805 | A-G | HET | INTRON | |
| SBS | Chr3 | 9440552 | T-G | HOMO | UTR_3_PRIME | |
| SBS | Chr3 | 15385715 | A-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 17799480 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 2032839 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 6755623 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g12240 |
| SBS | Chr4 | 16897834 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g28530 |
| SBS | Chr4 | 17685013 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 20873061 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 32587673 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 33885847 | A-C | HET | UTR_3_PRIME | |
| SBS | Chr5 | 2975462 | A-C | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr5 | 14218937 | T-G | HOMO | INTRON | |
| SBS | Chr6 | 5533448 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 21663344 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 10775985 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 11123212 | T-C | HET | INTERGENIC | |
| SBS | Chr9 | 18878034 | A-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 1696628 | C-T | HET | INTRON | |
| SBS | Chr11 | 13981014 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 14812385 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 2622542 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g05690 |
| SBS | Chr12 | 22344467 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 26537237 | C-G | HET | INTRON |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 140494 | 140499 | 5 | |
| Deletion | Chr11 | 2929209 | 2929211 | 2 | |
| Deletion | Chr12 | 3565459 | 3565485 | 26 | |
| Deletion | Chr11 | 3843993 | 3844020 | 27 | |
| Deletion | Chr5 | 6454314 | 6454316 | 2 | |
| Deletion | Chr5 | 13893913 | 13893914 | 1 | |
| Deletion | Chr8 | 14890347 | 14890348 | 1 | |
| Deletion | Chr5 | 15078520 | 15078523 | 3 | |
| Deletion | Chr12 | 15322278 | 15322279 | 1 | |
| Deletion | Chr12 | 17978664 | 17978668 | 4 | |
| Deletion | Chr8 | 19108903 | 19108905 | 2 | |
| Deletion | Chr4 | 19415479 | 19415484 | 5 | |
| Deletion | Chr8 | 20988759 | 20988783 | 24 | |
| Deletion | Chr1 | 25091555 | 25091556 | 1 | |
| Deletion | Chr3 | 27325009 | 27325010 | 1 | |
| Deletion | Chr3 | 27458248 | 27458250 | 2 | |
| Deletion | Chr5 | 29073636 | 29073637 | 1 | |
| Deletion | Chr7 | 29267281 | 29267298 | 17 | |
| Deletion | Chr1 | 32277789 | 32277797 | 8 | LOC_Os01g56070 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 6191826 | 6191827 | 2 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 24879798 | Chr3 | 33021399 | 2 |