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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6371246	A-T	HET	INTERGENIC
SBS	Chr1	7297256	T-A	HET	INTERGENIC
SBS	Chr1	9664634	A-G	HET	INTERGENIC
SBS	Chr1	13687536	T-G	HET	INTRON
SBS	Chr1	38783442	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g66790
SBS	Chr4	29740187	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g49880
SBS	Chr5	6894220	T-C	HET	INTERGENIC
SBS	Chr5	10337385	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17990
SBS	Chr5	18341222	C-G	HET	INTERGENIC
SBS	Chr6	6394367	G-A	HET	INTERGENIC
SBS	Chr6	15019820	G-A	HET	INTERGENIC
SBS	Chr6	15019821	T-A	HET	INTERGENIC
SBS	Chr6	29036691	A-G	HOMO	INTRON
SBS	Chr7	23596345	G-A	HET	UTR_3_PRIME
SBS	Chr8	5799050	A-G	HET	INTERGENIC
SBS	Chr8	6466958	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10970
SBS	Chr8	8314448	A-C	HOMO	INTERGENIC
SBS	Chr8	18162779	T-C	HOMO	INTERGENIC
SBS	Chr9	14706133	A-T	HET	INTERGENIC
SBS	Chr10	16292125	G-A	HET	INTERGENIC
SBS	Chr11	10691514	G-T	HOMO	INTERGENIC
SBS	Chr11	16821229	G-C	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1194621	1194631	10	LOC_Os08g02840
Deletion	Chr3	4856717	4856718	1
Deletion	Chr5	6168427	6168428	1
Deletion	Chr9	6765919	6765921	2
Deletion	Chr8	10138524	10138537	13
Deletion	Chr5	10346383	10346399	16
Deletion	Chr4	10872286	10872298	12	LOC_Os04g19520
Deletion	Chr10	11197347	11197381	34	LOC_Os10g21810
Deletion	Chr3	11926873	11926876	3
Deletion	Chr7	13299144	13299145	1	LOC_Os07g23540
Deletion	Chr3	15709103	15709146	43
Deletion	Chr7	17682773	17682796	23
Deletion	Chr2	17767200	17767240	40
Deletion	Chr4	20510311	20510355	44
Deletion	Chr2	21879799	21879802	3
Deletion	Chr8	22711486	22711505	19	LOC_Os08g36030
Deletion	Chr5	25503409	25503416	7
Deletion	Chr1	31404183	31404189	6
Deletion	Chr1	35921001	35941000	20000	4

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	20050528	20050528	1
Insertion	Chr2	35629948	35629948	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	13385137	13501528	LOC_Os04g23410
Inversion	Chr4	13443704	13501486

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	17425544	Chr1	14585433

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr8	3654150	7881880	4227730	648

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