Search Results
Mutant Information |
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Mutant Name | FN-26 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-26 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 7
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr3 | 22843833 | C-A | Homo | INTERGENIC | |
SBS | Chr6 | 29159055 | C-T | Homo | INTERGENIC | |
SBS | Chr8 | 3804896 | G-A | Homo | INTERGENIC | |
SBS | Chr9 | 6029287 | G-T | Homo | INTERGENIC | |
SBS | Chr9 | 11097347 | G-A | Homo | INTERGENIC | |
SBS | Chr11 | 12692693 | A-G | Homo | INTERGENIC | |
SBS | Chr11 | 15091032 | T-A | Homo | INTERGENIC |
Deletions: 21
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr8 | 3138886 | 3138918 | 32 | |
Deletion | Chr8 | 3814001 | 3876000 | 62000 | 13 |
Deletion | Chr8 | 3886001 | 3978000 | 92000 | 12 |
Deletion | Chr9 | 4045250 | 4045260 | 10 | LOC_Os09g07920 |
Deletion | Chr1 | 6319668 | 6319671 | 3 | LOC_Os01g11710 |
Deletion | Chr2 | 6426579 | 6426580 | 1 | |
Deletion | Chr5 | 7191175 | 7191182 | 7 | |
Deletion | Chr8 | 7384957 | 7384974 | 17 | |
Deletion | Chr7 | 8297878 | 8297890 | 12 | |
Deletion | Chr11 | 10682975 | 10682976 | 1 | |
Deletion | Chr5 | 10804117 | 10804126 | 9 | |
Deletion | Chr6 | 11647184 | 11647193 | 9 | |
Deletion | Chr8 | 12066903 | 12066918 | 15 | LOC_Os08g20130 |
Deletion | Chr5 | 14228001 | 14261000 | 33000 | 4 |
Deletion | Chr5 | 17829070 | 17829071 | 1 | |
Deletion | Chr5 | 19213650 | 19213651 | 1 | |
Deletion | Chr3 | 22857265 | 22857272 | 7 | LOC_Os03g41120 |
Deletion | Chr6 | 23124900 | 23124902 | 2 | |
Deletion | Chr3 | 24784708 | 24784729 | 21 | |
Deletion | Chr3 | 26316222 | 26316223 | 1 | |
Deletion | Chr3 | 29795669 | 29795676 | 7 |
No Insertion
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr3 | 22830890 | 22858751 | 2 |
No Translocation