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Mutant Information

Mutant Name	FN-261 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-261 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14540790	A-G	HET	INTRON
SBS	Chr1	32993293	G-A	HET	INTRON
SBS	Chr3	13998840	G-A	HET	INTERGENIC
SBS	Chr4	35076283	C-T	HET	INTERGENIC
SBS	Chr5	7935245	A-T	HET	INTRON
SBS	Chr5	15727618	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	20590947	A-C	HET	UTR_3_PRIME
SBS	Chr6	15066808	A-G	HOMO	INTRON
SBS	Chr6	28591158	A-T	HET	INTERGENIC
SBS	Chr7	642045	G-A	HET	INTERGENIC
SBS	Chr8	6695743	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g11410
SBS	Chr10	5102955	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g09460
SBS	Chr10	16527069	T-G	HET	INTERGENIC
SBS	Chr11	22441166	G-A	HOMO	INTERGENIC
SBS	Chr12	8445715	T-G	HOMO	INTERGENIC
SBS	Chr12	8887121	C-A	HOMO	INTERGENIC
SBS	Chr12	17720202	G-A	HOMO	SYNONYMOUS_CODING

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1793498	1793507	9
Deletion	Chr9	4898531	4898532	1
Deletion	Chr4	5213045	5213046	1
Deletion	Chr2	5659989	5660003	14
Deletion	Chr7	8735859	8735863	4
Deletion	Chr1	9466953	9466961	8
Deletion	Chr11	10590660	10590682	22	LOC_Os11g18700
Deletion	Chr10	12366001	12664000	298000	49
Deletion	Chr7	13244465	13244468	3
Deletion	Chr7	13406020	13406059	39	LOC_Os07g23740
Deletion	Chr8	13600984	13600995	11
Deletion	Chr2	14828626	14828631	5
Deletion	Chr12	15990389	15990390	1
Deletion	Chr7	19396997	19397005	8
Deletion	Chr7	20510685	20510688	3
Deletion	Chr1	21572602	21572611	9
Deletion	Chr6	24531398	24531402	4
Deletion	Chr6	27263835	27263840	5
Deletion	Chr8	27630345	27630348	3

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	13602349	13602349	1
Insertion	Chr8	18402092	18402092	1
Insertion	Chr8	19998614	19998614	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5871905	6254723	LOC_Os06g11190
Inversion	Chr6	5871927	6254732	LOC_Os06g11190

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	6201161	Chr2	7066370
Translocation	Chr4	6203019	Chr2	7066375