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| Mutant Information |
|---|
| Mutant Name | FN-262 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-262 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 24954639 | T-C | HOMO | INTERGENIC | |
| SBS | Chr10 | 10600041 | G-T | HET | INTRON | |
| SBS | Chr10 | 5024147 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 24127331 | G-A | HET | INTRON | |
| SBS | Chr11 | 26880430 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 9101938 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 17541965 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 3598467 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 20403345 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g36780 |
| SBS | Chr4 | 12274023 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g21700 |
| SBS | Chr4 | 20839093 | C-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 27725204 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 33608480 | G-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 17683389 | C-A | HET | INTERGENIC | |
| SBS | Chr5 | 1964983 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 28889857 | A-G | HOMO | INTRON | |
| SBS | Chr6 | 1799080 | C-G | HET | INTERGENIC | |
| SBS | Chr6 | 19846646 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g34090 |
| SBS | Chr7 | 19975805 | C-G | HOMO | UTR_3_PRIME | |
| SBS | Chr7 | 8099578 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g14210 |
| SBS | Chr7 | 9342439 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 15970885 | T-A | HET | INTERGENIC | |
| SBS | Chr8 | 23846335 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 6031419 | C-G | HET | INTERGENIC | |
| SBS | Chr9 | 20775965 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr9 | 5763418 | G-A | HET | INTERGENIC |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 9669268 | 9669270 | 2 | |
| Deletion | Chr1 | 13448254 | 13448257 | 3 | LOC_Os01g23900 |
| Deletion | Chr1 | 18465646 | 18465660 | 14 | |
| Deletion | Chr6 | 19798865 | 19798875 | 10 | |
| Deletion | Chr3 | 21008550 | 21008559 | 9 | |
| Deletion | Chr9 | 21331134 | 21331138 | 4 | |
| Deletion | Chr4 | 24523418 | 24523423 | 5 | |
| Deletion | Chr5 | 27917752 | 27917753 | 1 | |
| Deletion | Chr11 | 28219886 | 28219887 | 1 | |
| Deletion | Chr5 | 28928757 | 28928761 | 4 | |
| Deletion | Chr4 | 30089001 | 30126000 | 37000 | 4 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 28466294 | 28466295 | 2 | |
| Insertion | Chr5 | 20239916 | 20239917 | 2 | |
| Insertion | Chr8 | 3392972 | 3392973 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 4745838 | 10574130 | LOC_Os02g18210 |
| Inversion | Chr2 | 4745850 | 10574144 | LOC_Os02g18210 |
No Translocation