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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8227491	T-A	HET	INTERGENIC
SBS	Chr1	8227492	T-A	HET	INTERGENIC
SBS	Chr1	8227501	G-A	HET	INTERGENIC
SBS	Chr1	29689314	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g51650
SBS	Chr1	33926793	G-A	HOMO	INTRON
SBS	Chr1	37481979	C-T	HOMO	INTERGENIC
SBS	Chr2	13132432	T-A	HET	UTR_3_PRIME
SBS	Chr2	24155788	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g39940
SBS	Chr2	32873126	C-T	HOMO	INTERGENIC
SBS	Chr2	32873127	C-T	HOMO	INTERGENIC
SBS	Chr3	6941240	C-T	HET	INTRON
SBS	Chr3	11843735	T-C	HET	INTERGENIC
SBS	Chr3	13509739	C-T	HET	INTRON
SBS	Chr3	13509740	C-T	HET	INTRON
SBS	Chr3	35925989	A-T	HOMO	INTERGENIC
SBS	Chr4	8806637	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	10645178	G-A	HET	INTRON
SBS	Chr5	16180427	C-A	HOMO	INTERGENIC
SBS	Chr5	28553148	T-A	HET	SYNONYMOUS_CODING
SBS	Chr5	28553155	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g49770
SBS	Chr6	24160692	G-A	HET	INTERGENIC
SBS	Chr8	11648322	G-C	HET	INTERGENIC
SBS	Chr11	17942396	T-G	HET	INTERGENIC
SBS	Chr12	2898276	T-A	HET	INTERGENIC
SBS	Chr12	17045248	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28830

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	4410098	4410105	7
Deletion	Chr4	6362237	6362238	1	LOC_Os04g11620
Deletion	Chr12	8131551	8131552	1
Deletion	Chr5	9028497	9028498	1	LOC_Os05g15990
Deletion	Chr2	10569623	10569654	31	LOC_Os02g18200
Deletion	Chr10	12880691	12880720	29
Deletion	Chr12	12944355	12944357	2
Deletion	Chr10	16141346	16141363	17
Deletion	Chr1	18140211	18140212	1
Deletion	Chr8	20452783	20453866	1083
Deletion	Chr9	22381500	22381534	34	LOC_Os09g38970
Deletion	Chr3	24543406	24543411	5
Deletion	Chr12	25614392	25614402	10
Deletion	Chr7	25717942	25717948	6	LOC_Os07g42940
Deletion	Chr5	27289001	27312000	23000	4
Deletion	Chr3	28726953	28726988	35
Deletion	Chr1	29085365	29085372	7	LOC_Os01g50640
Deletion	Chr1	35962038	35962044	6

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	18282605	18282631	27
Insertion	Chr8	20315618	20315627	10
Insertion	Chr7	24313236	24313237	2
Insertion	Chr8	24146003	24146004	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1408866	2703879	LOC_Os12g03540
Inversion	Chr12	1408879	2704003	LOC_Os12g03540
Inversion	Chr2	1775647	2167250	LOC_Os02g04080
Inversion	Chr2	1775696	2167128	LOC_Os02g04080
Inversion	Chr10	7407208	8062220	LOC_Os10g15180
Inversion	Chr10	7407247	8062224	LOC_Os10g15180
Inversion	Chr1	13105400	13599906	LOC_Os01g23330
Inversion	Chr10	18310527	18385511	LOC_Os10g34340

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8941257	Chr1	30237200
Translocation	Chr10	11187080	Chr8	25365005	LOC_Os10g21800
Translocation	Chr9	14377088	Chr2	32007612
Translocation	Chr9	15262229	Chr7	7408638	LOC_Os07g12900
Translocation	Chr12	17347096	Chr8	2691560
Translocation	Chr8	21877960	Chr2	29879229	LOC_Os02g48830
Translocation	Chr7	23015057	Chr3	23476830	LOC_Os07g38310

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