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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17244528	C-A	HET	INTERGENIC
SBS	Chr1	25369840	C-T	HOMO	INTRON
SBS	Chr1	25792027	G-A	HET	INTERGENIC
SBS	Chr1	26580846	T-G	HET	INTERGENIC
SBS	Chr10	10363563	G-C	HET	INTERGENIC
SBS	Chr11	16207586	G-C	HOMO	UTR_5_PRIME
SBS	Chr11	18252742	T-A	HOMO	INTERGENIC
SBS	Chr11	1948253	G-A	HOMO	INTERGENIC
SBS	Chr11	24056988	G-A	HOMO	INTERGENIC
SBS	Chr12	211649	C-A	HET	UTR_3_PRIME
SBS	Chr12	3288666	C-T	HOMO	INTERGENIC
SBS	Chr12	7730614	A-T	HET	INTERGENIC
SBS	Chr2	12801457	C-G	HET	INTRON
SBS	Chr2	16320170	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g27550
SBS	Chr2	3655678	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g07110
SBS	Chr3	19431477	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g34096
SBS	Chr3	21132433	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g38070
SBS	Chr3	24164033	C-A	HET	INTERGENIC
SBS	Chr3	33212545	G-A	HOMO	INTERGENIC
SBS	Chr4	12201198	G-A	HOMO	INTERGENIC
SBS	Chr4	19247703	G-A	HET	INTERGENIC
SBS	Chr4	19883501	G-A	HOMO	INTRON
SBS	Chr4	5687698	A-C	HET	INTRON
SBS	Chr6	562529	G-A	HET	INTERGENIC
SBS	Chr6	9899381	T-A	HET	INTERGENIC
SBS	Chr7	16163975	C-G	HOMO	INTERGENIC
SBS	Chr7	6407791	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g11610
SBS	Chr8	17756645	G-C	HET	INTERGENIC
SBS	Chr8	21687051	C-T	HET	INTERGENIC
SBS	Chr8	27291715	C-T	HET	INTERGENIC
SBS	Chr9	8985057	T-A	HOMO	INTERGENIC
SBS	Chr9	9029131	T-C	HOMO	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1142310	1142317	7
Deletion	Chr12	1340334	1340335	1
Deletion	Chr3	2605001	2621000	16000	4
Deletion	Chr3	2638001	2730000	92000	15
Deletion	Chr3	3034542	3035316	774
Deletion	Chr8	3430841	3430856	15
Deletion	Chr5	4845864	4845872	8
Deletion	Chr8	9447697	9447702	5
Deletion	Chr5	9647479	9647480	1
Deletion	Chr10	10489282	10489285	3
Deletion	Chr5	14820003	14820004	1
Deletion	Chr5	19695317	19695318	1
Deletion	Chr9	20973324	20973331	7
Deletion	Chr6	21962018	21962019	1
Deletion	Chr12	25127161	25127171	10
Deletion	Chr1	29661872	29661877	5
Deletion	Chr1	30310450	30310457	7

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23079848	23079849	2
Insertion	Chr12	18907607	18907610	4
Insertion	Chr12	20711488	20711489	2
Insertion	Chr3	16289691	16289692	2
Insertion	Chr8	20795951	20795951	1
Insertion	Chr8	8657538	8657538	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	17940069	27557284	2
Inversion	Chr1	29814892	34448233	LOC_Os01g59570

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	5678726	Chr1	22198164
Translocation	Chr10	13647302	Chr2	10936595	LOC_Os02g18760
Translocation	Chr11	15785784	Chr2	16753851
Translocation	Chr12	18854836	Chr5	24436516	LOC_Os05g41770
Translocation	Chr12	25447923	Chr5	10303861
Translocation	Chr12	25447924	Chr5	10303864

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