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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4905180	T-A	HET	INTERGENIC
SBS	Chr1	4905181	C-A	HET	INTERGENIC
SBS	Chr1	5399902	C-T	HET	INTERGENIC
SBS	Chr1	7837533	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g13990
SBS	Chr1	22862767	G-T	HET	INTERGENIC
SBS	Chr1	40212844	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	17651311	G-A	HET	INTERGENIC
SBS	Chr2	19517941	C-T	HET	INTERGENIC
SBS	Chr2	23098067	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g38170
SBS	Chr2	23098654	C-A	HOMO	UTR_3_PRIME
SBS	Chr2	29347351	T-C	HOMO	INTRON
SBS	Chr2	30667705	G-A	HOMO	INTERGENIC
SBS	Chr3	19091242	A-T	HET	INTERGENIC
SBS	Chr3	36080939	G-T	HOMO	INTERGENIC
SBS	Chr4	5783594	A-C	HET	INTERGENIC
SBS	Chr4	11669435	T-C	HET	INTRON
SBS	Chr4	28045643	A-C	HOMO	INTERGENIC
SBS	Chr5	20914780	T-C	HOMO	INTERGENIC
SBS	Chr5	20959395	C-T	HOMO	INTERGENIC
SBS	Chr5	27067324	G-T	HOMO	INTERGENIC
SBS	Chr5	27067325	C-G	HOMO	INTERGENIC
SBS	Chr6	2472193	T-A	HOMO	INTERGENIC
SBS	Chr6	4762998	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g09420
SBS	Chr6	10146362	C-T	HOMO	INTERGENIC
SBS	Chr7	14258216	G-A	HET	INTERGENIC
SBS	Chr7	26760017	G-A	HET	INTERGENIC
SBS	Chr10	13120925	C-T	HET	INTERGENIC
SBS	Chr11	14468732	C-A	HOMO	INTRON
SBS	Chr11	27644922	G-T	HET	INTERGENIC
SBS	Chr12	19300198	G-A	HOMO	INTERGENIC
SBS	Chr12	19974819	T-C	HOMO	INTERGENIC
SBS	Chr12	21487565	A-T	HOMO	INTERGENIC
SBS	Chr12	27446979	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g44280

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	748017	748018	1
Deletion	Chr12	1194434	1215309	20875	4
Deletion	Chr10	2874421	2874439	18	LOC_Os10g05700
Deletion	Chr11	5394971	5394973	2
Deletion	Chr11	5905213	5905214	1
Deletion	Chr10	7372135	7372142	7
Deletion	Chr12	8261078	8261082	4
Deletion	Chr4	8645616	8645617	1
Deletion	Chr2	10876831	10876832	1
Deletion	Chr8	11266041	11266046	5
Deletion	Chr9	13627687	13627733	46
Deletion	Chr3	15200146	15200147	1
Deletion	Chr10	16610243	16610245	2
Deletion	Chr8	18919277	18919286	9
Deletion	Chr8	19038087	19038092	5
Deletion	Chr4	19473797	19473799	2
Deletion	Chr12	19962757	19962763	6
Deletion	Chr2	20011434	20011441	7
Deletion	Chr11	20304081	20304083	2
Deletion	Chr2	23104684	23104873	189
Deletion	Chr5	27206779	27206780	1	LOC_Os05g47490
Deletion	Chr4	35295957	35295967	10
Deletion	Chr1	37604401	37604402	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	24620953	24620970	18
Insertion	Chr1	23909458	23909463	6
Insertion	Chr1	39916646	39916649	4
Insertion	Chr2	8103302	8103305	4
Insertion	Chr11	3220837	3220839	3
Insertion	Chr5	26798027	26798027	1	LOC_Os05g46200
Insertion	Chr8	26530008	26530008	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	16923399	16927784

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1194441	Chr1	952239	LOC_Os01g02740
Translocation	Chr12	1215306	Chr1	952208	2
Translocation	Chr5	5528659	Chr2	17246375	LOC_Os02g29130
Translocation	Chr9	6366295	Chr7	22900023
Translocation	Chr12	10628626	Chr6	16470888	LOC_Os12g18374
Translocation	Chr7	11905835	Chr6	15402609
Translocation	Chr11	13737848	Chr10	8063158	LOC_Os10g15180
Translocation	Chr12	25015627	Chr1	2545852	LOC_Os12g40419

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