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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27199336	G-C	HOMO	INTRON
SBS	Chr1	42904976	A-T	HOMO	STOP_GAINED	LOC_Os01g74100
SBS	Chr1	43245162	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g74660
SBS	Chr2	29069474	C-T	HET	UTR_5_PRIME
SBS	Chr3	4338889	G-A	HET	UTR_5_PRIME
SBS	Chr3	5384978	T-C	HET	INTERGENIC
SBS	Chr3	8543166	G-A	HET	INTERGENIC
SBS	Chr3	10482132	C-T	HET	INTRON
SBS	Chr3	21256042	G-A	HET	INTERGENIC
SBS	Chr3	27898508	T-C	HET	INTERGENIC
SBS	Chr3	35048486	A-T	HET	INTERGENIC
SBS	Chr4	200583	G-T	HET	INTERGENIC
SBS	Chr4	8908813	G-C	HET	INTERGENIC
SBS	Chr4	11713340	A-C	HET	INTERGENIC
SBS	Chr4	27622172	G-T	HET	INTERGENIC
SBS	Chr5	4362126	C-T	HET	INTERGENIC
SBS	Chr5	7906012	G-A	HET	INTERGENIC
SBS	Chr5	19354864	G-T	HET	INTRON
SBS	Chr6	10454085	A-G	HOMO	INTERGENIC
SBS	Chr6	15848881	T-A	HOMO	INTERGENIC
SBS	Chr6	16801586	C-T	HET	INTERGENIC
SBS	Chr7	22084462	C-T	HET	INTRON
SBS	Chr7	29411324	T-A	HET	INTERGENIC
SBS	Chr8	8012901	T-C	HET	INTRON
SBS	Chr8	13290846	G-A	HET	INTERGENIC
SBS	Chr8	13468488	C-A	HET	INTERGENIC
SBS	Chr9	4236758	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g08180
SBS	Chr9	15758033	G-A	HET	INTRON
SBS	Chr10	12211294	C-T	HET	INTERGENIC
SBS	Chr10	14583552	T-C	HET	INTERGENIC
SBS	Chr11	1480409	G-T	HOMO	INTERGENIC
SBS	Chr11	12885199	T-A	HOMO	INTERGENIC
SBS	Chr11	19293719	G-A	HOMO	INTERGENIC
SBS	Chr11	28843211	G-T	HOMO	INTERGENIC
SBS	Chr12	5471688	G-A	HET	INTERGENIC
SBS	Chr12	7711876	T-C	HET	INTERGENIC
SBS	Chr12	7972787	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14050
SBS	Chr12	11157391	C-T	HOMO	INTERGENIC
SBS	Chr12	25663439	G-A	HET	INTERGENIC
SBS	Chr12	25663440	A-G	HET	INTERGENIC
SBS	Chr12	26336025	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g42370

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	141203	141204	1
Deletion	Chr6	840162	840166	4
Deletion	Chr1	1731448	1731454	6
Deletion	Chr5	2265880	2266580	700
Deletion	Chr5	2309643	2309645	2
Deletion	Chr9	3652608	3652612	4
Deletion	Chr5	9196712	9196721	9
Deletion	Chr4	10136256	10136259	3
Deletion	Chr11	12885250	12885251	1
Deletion	Chr10	12967655	12967656	1
Deletion	Chr2	13528322	13528324	2
Deletion	Chr5	15009694	15009695	1
Deletion	Chr8	17615265	17615271	6
Deletion	Chr1	18465653	18465660	7
Deletion	Chr12	19260076	19260078	2
Deletion	Chr12	21321062	21321063	1
Deletion	Chr1	21507478	21507487	9
Deletion	Chr3	22757809	22757823	14
Deletion	Chr6	27087006	27087024	18
Deletion	Chr1	35700970	36661456	960486	145
Deletion	Chr3	35953001	35969000	16000	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	25264215	25264232	18
Insertion	Chr2	18088385	18088396	12
Insertion	Chr9	9197671	9197672	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	13469771	14015448
Inversion	Chr8	13471138	14015449
Inversion	Chr12	20508398	20543731	LOC_Os12g33958
Inversion	Chr1	35599172	36661437
Inversion	Chr1	35599183	35701001	LOC_Os01g61710

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	2266574	Chr3	34411877
Translocation	Chr8	13469778	Chr7	23142696

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